{ "type": "genome", "identifier": "GCF_008017455.1", "organism": "Pontibacter qinzhouensis", "title": "Pontibacter qinzhouensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi University for Nationalities", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008017455.1", "bioproject": "PRJNA224116", "biosample": "SAMN12551614", "wgs_master": "VRTY00000000.1", "refseq_category": "reference genome", "taxid": "2603253", "species_taxid": "2603253", "organism_name": "Pontibacter qinzhouensis", "infraspecific_name": "strain=GY10130", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/19", "asm_name": "ASM801745v1", "asm_submitter": "Guangxi University for Nationalities", "gbrs_paired_asm": "GCA_008017455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/017/455/GCF_008017455.1_ASM801745v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6218624", "genome_size_ungapped": "6218624", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "221", "contig_count": "221", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008017455.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4955", "protein_coding_gene_count": "4850", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-19", "dateModified": "2019-08-19", "datePublished": "2019-08-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibacter qinzhouensis" ], "sample_taxid": [ "2603253" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.779 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6218624", "Number of Sequences": "221", "Longest Sequences (bp)": "157861", "N50 (bp)": "49584", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.1", "Number of CDSs": "4664", "Average Protein Length": "343.8", "Coding Ratio (%)": "77.3", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontibacter beigongshangensis", "strain": "strain=T6-1", "accession": "GCA_014332515.1", "taxid": 2574733, "species_taxid": 2574733, "relation_to_type": "type", "validated": true, "ani": 81.7709, "matched_fragments": 1102, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter virosus", "strain": "strain=DSM 100231", "accession": "GCA_003096355.1", "taxid": 1765052, "species_taxid": 1765052, "relation_to_type": "type", "validated": true, "ani": 78.628, "matched_fragments": 351, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Botryobacter ruber", "strain": "strain=SYSU D60016", "accession": "GCA_003347595.2", "taxid": 2171629, "species_taxid": 2171629, "relation_to_type": "type", "validated": true, "ani": 78.2582, "matched_fragments": 590, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter actiniarum", "strain": "strain=DSM 19842", "accession": "GCA_003585765.1", "taxid": 323450, "species_taxid": 323450, "relation_to_type": "type", "validated": true, "ani": 78.0207, "matched_fragments": 360, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter actiniarum", "strain": "strain=DSM 19842", "accession": "GCA_000472485.1", "taxid": 323450, "species_taxid": 323450, "relation_to_type": "type", "validated": true, "ani": 78.0158, "matched_fragments": 366, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter arcticus", "strain": "strain=2b14", "accession": "GCA_003284895.1", "taxid": 2080288, "species_taxid": 2080288, "relation_to_type": "type", "validated": true, "ani": 77.9464, "matched_fragments": 296, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter roseus", "strain": "strain=DSM 17521", "accession": "GCA_000373265.1", "taxid": 336989, "species_taxid": 336989, "relation_to_type": "type", "validated": true, "ani": 77.8711, "matched_fragments": 327, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ummariensis", "strain": "strain=NKM1", "accession": "GCA_900188175.1", "taxid": 1610492, "species_taxid": 1610492, "relation_to_type": "type", "validated": true, "ani": 77.7434, "matched_fragments": 306, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ummariensis", "strain": "strain=NKM1", "accession": "GCA_003002015.1", "taxid": 1610492, "species_taxid": 1610492, "relation_to_type": "type", "validated": true, "ani": 77.7182, "matched_fragments": 305, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter mucosus", "strain": "strain=DSM 100162", "accession": "GCA_003054055.1", "taxid": 1649266, "species_taxid": 1649266, "relation_to_type": "type", "validated": true, "ani": 77.6447, "matched_fragments": 354, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter pamirensis", "strain": "strain=TRT317", "accession": "GCA_010015475.1", "taxid": 2562824, "species_taxid": 2562824, "relation_to_type": "type", "validated": true, "ani": 77.6149, "matched_fragments": 350, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ruber", "strain": "strain=JC213", "accession": "GCA_023630205.1", "taxid": 1343895, "species_taxid": 1343895, "relation_to_type": "type", "validated": true, "ani": 77.6089, "matched_fragments": 354, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter burrus", "strain": "strain=BT327", "accession": "GCA_010686685.1", "taxid": 2704466, "species_taxid": 2704466, "relation_to_type": "type", "validated": true, "ani": 77.5654, "matched_fragments": 268, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ramchanderi", "strain": "strain=LP43", "accession": "GCA_002846395.1", "taxid": 1179743, "species_taxid": 1179743, "relation_to_type": "type", "validated": true, "ani": 77.5653, "matched_fragments": 306, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter aquaedesilientis", "strain": "strain=JH31", "accession": "GCA_014773225.1", "taxid": 2766980, "species_taxid": 2766980, "relation_to_type": "type", "validated": true, "ani": 77.5551, "matched_fragments": 279, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter cellulosilyticus", "strain": "strain=SD6", "accession": "GCA_014306105.1", "taxid": 1720253, "species_taxid": 1720253, "relation_to_type": "type", "validated": true, "ani": 77.5149, "matched_fragments": 265, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter pudoricolor", "strain": "strain=BT214", "accession": "GCA_010092985.1", "taxid": 2694930, "species_taxid": 2694930, "relation_to_type": "type", "validated": true, "ani": 77.3652, "matched_fragments": 283, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter silvestris", "strain": "strain=XAAS-R86T", "accession": "GCA_020907275.1", "taxid": 2305183, "species_taxid": 2305183, "relation_to_type": "type", "validated": true, "ani": 77.2929, "matched_fragments": 240, "total_fragments": 1967, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008017455.1", "gtdb_species": "s__Botryobacter sp008017455", "ani": 100.0, "matched_fragments": 1959, "total_fragments": 1967, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Botryobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014332515.1", "gtdb_species": "s__Botryobacter beigongshangensis", "ani": 81.7638, "matched_fragments": 1103, "total_fragments": 1967, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Botryobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005491705.1", "gtdb_species": "s__SGAir0037 sp005491705", "ani": 78.3581, "matched_fragments": 344, "total_fragments": 1967, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__SGAir0037", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003347595.2", "gtdb_species": "s__Botryobacter ruber", "ani": 78.2644, "matched_fragments": 589, "total_fragments": 1967, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Botryobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000373265.1", "gtdb_species": "s__Pontibacter roseus", "ani": 77.8655, "matched_fragments": 328, "total_fragments": 1967, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188175.1", "gtdb_species": "s__Pontibacter ummariensis", 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51.009, "coding_genes": 4209.666, "rRNA16S_genes": 4.0, "tRNA_genes": 46.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.363, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pontibacter", "qinzhouensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }