{
    "type": "genome",
    "identifier": "GCF_008065095.1",
    "organism": "Gemmata obscuriglobus",
    "title": "Gemmata obscuriglobus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud Universiteit Nijmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008065095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10980026",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "114",
        "species_taxid": "114",
        "organism_name": "Gemmata obscuriglobus",
        "infraspecific_name": "strain=DSM 5831",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/22",
        "asm_name": "ASM806509v1",
        "asm_submitter": "Radboud Universiteit Nijmegen",
        "gbrs_paired_asm": "GCA_008065095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/065/095/GCF_008065095.1_ASM806509v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8999201",
        "genome_size_ungapped": "8999201",
        "gc_percent": "67.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008065095.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "7431",
        "protein_coding_gene_count": "7236",
        "non_coding_gene_count": "103",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-22",
    "dateModified": "2019-08-22",
    "datePublished": "2019-08-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmata obscuriglobus"
        ],
        "sample_taxid": [
            "114"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "2.458 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8999201",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "8999201",
        "N50 (bp)": "8999201",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.4",
        "Number of CDSs": "7658",
        "Average Protein Length": "331.3",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "15",
        "Number of tRNAs": "97",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gemmata obscuriglobus",
                "strain": "strain=DSM 5831",
                "accession": "GCA_008065095.1",
                "taxid": 114,
                "species_taxid": 114,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2999,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gemmata obscuriglobus",
                "strain": "strain=DSM 5831",
                "accession": "GCA_003149495.1",
                "taxid": 114,
                "species_taxid": 114,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9982,
                "matched_fragments": 2997,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gemmata obscuriglobus",
                "strain": "",
                "accession": "GCA_901538385.1",
                "taxid": 114,
                "species_taxid": 114,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.998,
                "matched_fragments": 2998,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gemmata obscuriglobus",
                "strain": "strain=UQM 2246",
                "accession": "GCA_000171775.1",
                "taxid": 114,
                "species_taxid": 114,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8005,
                "matched_fragments": 2605,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Urbifossiella limnaea",
                "strain": "strain=ETA_A1",
                "accession": "GCA_007747215.1",
                "taxid": 2528023,
                "species_taxid": 2528023,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0813,
                "matched_fragments": 957,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fimbriiglobus ruber",
                "strain": "strain=SP5",
                "accession": "GCA_002197845.1",
                "taxid": 1908690,
                "species_taxid": 1908690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6692,
                "matched_fragments": 618,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dietzia timorensis",
                "strain": "strain=ID05-A0528",
                "accession": "GCA_001659785.1",
                "taxid": 499555,
                "species_taxid": 499555,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9325,
                "matched_fragments": 52,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoplanes elegans",
                "strain": "strain=DSM 11907",
                "accession": "GCA_003258805.1",
                "taxid": 29408,
                "species_taxid": 29408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9063,
                "matched_fragments": 166,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoplanes elegans",
                "strain": "strain=DSM 11907",
                "accession": "GCA_016653355.1",
                "taxid": 29408,
                "species_taxid": 29408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9062,
                "matched_fragments": 191,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachybacterium muris",
                "strain": "strain=DSM 15460",
                "accession": "GCA_016907455.1",
                "taxid": 219301,
                "species_taxid": 219301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.817,
                "matched_fragments": 66,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Propioniciclava soli",
                "strain": "strain=YIM S02567",
                "accession": "GCA_014858005.1",
                "taxid": 2775081,
                "species_taxid": 2775081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8132,
                "matched_fragments": 98,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phytoactinopolyspora halophila",
                "strain": "strain=YIM 96934",
                "accession": "GCA_003287285.1",
                "taxid": 1981511,
                "species_taxid": 1981511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7569,
                "matched_fragments": 79,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsenicicoccus piscis",
                "strain": "strain=DSM 22760",
                "accession": "GCA_022568835.1",
                "taxid": 673954,
                "species_taxid": 673954,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7251,
                "matched_fragments": 118,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nakamurella deserti",
                "strain": "strain=12Sc4-1",
                "accession": "GCA_003260015.1",
                "taxid": 2164074,
                "species_taxid": 2164074,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6693,
                "matched_fragments": 176,
                "total_fragments": 2999,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008065095.1",
                "gtdb_species": "s__Gemmata obscuriglobus",
                "ani": 100.0,
                "matched_fragments": 2999,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017939745.1",
                "gtdb_species": "s__Gemmata sp017939745",
                "ani": 80.0319,
                "matched_fragments": 1487,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017306025.1",
                "gtdb_species": "s__Gemmata sp017306025",
                "ani": 79.9314,
                "matched_fragments": 1025,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000531095.1",
                "gtdb_species": "s__Gemmata massiliana",
                "ani": 79.7939,
                "matched_fragments": 1417,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013128195.2",
                "gtdb_species": "s__Gemmata tundricola",
                "ani": 79.787,
                "matched_fragments": 1368,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_901538265.1",
                "gtdb_species": "s__Gemmata massiliana_A",
                "ani": 79.7603,
                "matched_fragments": 1418,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016872595.1",
                "gtdb_species": "s__Gemmata sp016872595",
                "ani": 79.5668,
                "matched_fragments": 1067,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_901538445.1",
                "gtdb_species": "s__Gemmata sp901538445",
                "ani": 79.1496,
                "matched_fragments": 1120,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005772955.1",
                "gtdb_species": "s__Gemmata sp005772955",
                "ani": 78.9292,
                "matched_fragments": 986,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_005773755.1",
                "gtdb_species": "s__Gemmata sp005773755",
                "ani": 78.8891,
                "matched_fragments": 765,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007747215.1",
                "gtdb_species": "s__Urbifossiella limnaea",
                "ani": 78.0246,
                "matched_fragments": 971,
                "total_fragments": 2999,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Urbifossiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.146,
        "cell_length": 0.146,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 28.0,
        "optimum_ph": null,
        "genome_size": 9107524.0,
        "gc_content": 67.288,
        "coding_genes": 7043.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 75.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Gemmata",
        "obscuriglobus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}