{ "type": "genome", "identifier": "GCF_008065135.1", "organism": "Roseimaritima ulvae", "title": "Roseimaritima ulvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Radboud Universiteit Nijmegen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008065135.1", "bioproject": "PRJNA224116", "biosample": "SAMN10980022", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "980254", "species_taxid": "980254", "organism_name": "Roseimaritima ulvae", "infraspecific_name": "strain=UC8", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/22", "asm_name": "ASM806513v1", "asm_submitter": "Radboud Universiteit Nijmegen", "gbrs_paired_asm": "GCA_008065135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/065/135/GCF_008065135.1_ASM806513v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8212515", "genome_size_ungapped": "8212515", "gc_percent": "59.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008065135.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "5829", "protein_coding_gene_count": "5727", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-22", "dateModified": "2019-08-22", "datePublished": "2019-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseimaritima ulvae" ], "sample_taxid": [ "980254" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.297 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8212515", "Number of Sequences": "1", "Longest Sequences (bp)": "8212515", "N50 (bp)": "8212515", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.1", "Number of CDSs": "5907", "Average Protein Length": "401.1", "Coding Ratio (%)": "86.6", "Number of rRNAs": "3", "Number of tRNAs": "71", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseimaritima ulvae", "strain": "strain=UC8", "accession": "GCA_008065135.1", "taxid": 980254, "species_taxid": 980254, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2737, "total_fragments": 2737, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseimaritima ulvae", "strain": "strain=DSM 25454", "accession": "GCA_001642915.1", "taxid": 980254, "species_taxid": 980254, "relation_to_type": "type", "validated": true, "ani": 99.9493, "matched_fragments": 2656, "total_fragments": 2737, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseimaritima sediminicola", "strain": "strain=JC651", "accession": "GCA_009618275.1", "taxid": 2662066, "species_taxid": 2662066, "relation_to_type": "type", "validated": true, "ani": 78.5737, "matched_fragments": 823, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crateriforma conspicua", "strain": "strain=Mal65", "accession": "GCA_007752935.1", "taxid": 2527996, "species_taxid": 2527996, "relation_to_type": "type", "validated": true, "ani": 77.0859, "matched_fragments": 210, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima multifibrata", "strain": "strain=FF011L", "accession": "GCA_007741495.1", "taxid": 1930274, "species_taxid": 1930274, "relation_to_type": "type", "validated": true, "ani": 77.0303, "matched_fragments": 285, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crateriforma spongiae", "strain": "strain=JC647", "accession": "GCA_012290005.1", "taxid": 2724528, "species_taxid": 2724528, "relation_to_type": "type", "validated": true, "ani": 76.9969, "matched_fragments": 204, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula aestuarii", "strain": "strain=ICT_H3.1", "accession": "GCA_023701485.1", "taxid": 2950107, "species_taxid": 2950107, "relation_to_type": "type", "validated": true, "ani": 76.8775, "matched_fragments": 176, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula reticaptiva", "strain": "strain=Poly59", "accession": "GCA_007860175.1", "taxid": 2528013, "species_taxid": 2528013, "relation_to_type": "type", "validated": true, "ani": 76.8763, "matched_fragments": 148, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria maiorica", "strain": "strain=Mal15", "accession": "GCA_008035925.1", "taxid": 2795974, "species_taxid": 2795974, "relation_to_type": "type", "validated": true, "ani": 76.4461, "matched_fragments": 289, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria varia", "strain": "strain=Pla52n", "accession": "GCA_007860045.1", "taxid": 2528005, "species_taxid": 2528005, "relation_to_type": "type", "validated": true, "ani": 76.428, "matched_fragments": 202, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rosistilla oblonga", "strain": "strain=CA51", "accession": "GCA_007751715.1", "taxid": 2527990, "species_taxid": 2527990, "relation_to_type": "type", "validated": true, "ani": 76.174, "matched_fragments": 210, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 74.6612, "matched_fragments": 81, "total_fragments": 2737, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008065135.1", "gtdb_species": "s__Roseimaritima ulvae", "ani": 100.0, "matched_fragments": 2737, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Roseimaritima", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_009618275.1", "gtdb_species": "s__Roseimaritima sp009618275", "ani": 78.5729, "matched_fragments": 824, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Roseimaritima", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007752935.1", "gtdb_species": "s__Crateriforma conspicua", "ani": 77.0859, "matched_fragments": 210, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Crateriforma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "98.96", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007741495.1", "gtdb_species": "s__Roseimaritima sp007741495", "ani": 77.0305, "matched_fragments": 285, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Roseimaritima", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012290005.1", "gtdb_species": "s__Crateriforma spongiae", "ani": 77.0083, "matched_fragments": 203, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Crateriforma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.43", "min_intra_species_ani": "98.43", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007741555.1", "gtdb_species": "s__K23-9 sp007741555", "ani": 76.8845, "matched_fragments": 168, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__K23-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014154935.1", "gtdb_species": "s__Stieleria sp014154935", "ani": 76.7656, "matched_fragments": 308, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007860045.1", "gtdb_species": "s__Stieleria varia", "ani": 76.4333, "matched_fragments": 200, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007751715.1", "gtdb_species": "s__Rosistilla oblonga", "ani": 76.174, "matched_fragments": 210, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rosistilla", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010367455.1", "gtdb_species": "s__Laterigemmans baculatus", "ani": 76.1369, "matched_fragments": 236, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Laterigemmans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002901265.1", "gtdb_species": "s__Stieleria baltica_A", "ani": 76.0587, "matched_fragments": 149, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002422955.1", "gtdb_species": "s__UBA6163 sp002422955", "ani": 75.6471, "matched_fragments": 111, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__UBA6163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002428205.1", "gtdb_species": "s__UBA6163 sp002428205", "ani": 75.5994, "matched_fragments": 118, "total_fragments": 2737, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__UBA6163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 30.0, "optimum_ph": null, "genome_size": 8116044.5, "gc_content": 59.132, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Roseimaritima", "ulvae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }