{ "type": "genome", "identifier": "GCF_008084145.1", "organism": "Paenibacillus faecis", "title": "Paenibacillus faecis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korean Collection for Oral Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008084145.1", "bioproject": "PRJNA224116", "biosample": "SAMN12429299", "wgs_master": "VSDO00000000.1", "refseq_category": "reference genome", "taxid": "862114", "species_taxid": "862114", "organism_name": "Paenibacillus faecis", "infraspecific_name": "strain=DSM 23593", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/24", "asm_name": "ASM808414v1", "asm_submitter": "Korean Collection for Oral Microbiology", "gbrs_paired_asm": "GCA_008084145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/084/145/GCF_008084145.1_ASM808414v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6343727", "genome_size_ungapped": "6342986", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008084145.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5699", "protein_coding_gene_count": "5553", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-24", "dateModified": "2019-08-24", "datePublished": "2019-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus faecis" ], "sample_taxid": [ "862114" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "France: Bordeaux" ], "sample_host_location_id": [], "data_size": "1.798 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.58, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6343727", "Number of Sequences": "9", "Longest Sequences (bp)": "1787465", "N50 (bp)": "1025317", "Gap Ratio (%)": "0.011681", "GCcontent (%)": "52.8", "Number of CDSs": "5737", "Average Protein Length": "317.9", "Coding Ratio (%)": "86.2", "Number of rRNAs": "7", "Number of tRNAs": "67", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus macerans", "strain": "strain=NCTC6355", "accession": "GCA_900454495.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 79.4138, "matched_fragments": 733, 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"below_threshold" }, { "organism_name": "Paenibacillus oralis", "strain": "strain=KCOM 3021", "accession": "GCA_003863965.1", "taxid": 2490856, "species_taxid": 2490856, "relation_to_type": "type", "validated": true, "ani": 79.2197, "matched_fragments": 721, "total_fragments": 2111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 78.7941, "matched_fragments": 518, "total_fragments": 2111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus barengoltzii", "strain": "strain=NBRC 101215", "accession": "GCA_004000745.1", "taxid": 343517, "species_taxid": 343517, "relation_to_type": "type", "validated": true, "ani": 78.474, "matched_fragments": 401, "total_fragments": 2111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rubinfantis", "strain": "strain=MT18", "accession": "GCA_001486505.1", "taxid": 1720296, "species_taxid": 1720296, "relation_to_type": "type", "validated": true, "ani": 78.4297, "matched_fragments": 527, "total_fragments": 2111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus brevis", "strain": "strain=MSJ-6", "accession": "GCA_018919145.1", "taxid": 2841508, "species_taxid": 2841508, "relation_to_type": "type", "validated": true, "ani": 78.4146, "matched_fragments": 365, "total_fragments": 2111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ihumii", "strain": "strain=AT5", "accession": "GCA_001403875.1", "taxid": 687436, "species_taxid": 687436, "relation_to_type": "type", "validated": true, "ani": 78.3386, "matched_fragments": 418, "total_fragments": 2111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fontibacillus panacisegetis", "strain": "strain=DSM 28129", 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