{
    "type": "genome",
    "identifier": "GCF_008084905.1",
    "organism": "Formosa maritima",
    "title": "Formosa maritima",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Insititute of Oceanology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008084905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12569072",
        "wgs_master": "VSFC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2592046",
        "species_taxid": "2592046",
        "organism_name": "Formosa maritima",
        "infraspecific_name": "strain=1494",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/24",
        "asm_name": "ASM808490v1",
        "asm_submitter": "Insititute of Oceanology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_008084905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/084/905/GCF_008084905.1_ASM808490v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3043232",
        "genome_size_ungapped": "3037659",
        "gc_percent": "31.000000",
        "replicon_count": "0",
        "scaffold_count": "63",
        "contig_count": "63",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008084905.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2838",
        "protein_coding_gene_count": "2775",
        "non_coding_gene_count": "45",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-24",
    "dateModified": "2019-08-24",
    "datePublished": "2019-08-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Formosa maritima"
        ],
        "sample_taxid": [
            "2592046"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.840 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3043232",
        "Number of Sequences": "63",
        "Longest Sequences (bp)": "397525",
        "N50 (bp)": "150535",
        "Gap Ratio (%)": "0.183423",
        "GCcontent (%)": "31.1",
        "Number of CDSs": "2761",
        "Average Protein Length": "328.9",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Xanthomarina gelatinilytica",
                "strain": "strain=AK20",
                "accession": "GCA_000348685.1",
                "taxid": 1137281,
                "species_taxid": 1137281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5526,
                "matched_fragments": 600,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanihabitans sediminis",
                "strain": "strain=DSM 28133",
                "accession": "GCA_003315315.1",
                "taxid": 1812012,
                "species_taxid": 1812012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4675,
                "matched_fragments": 325,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bizionia algoritergicola",
                "strain": "strain=APA-1",
                "accession": "GCA_008086165.1",
                "taxid": 291187,
                "species_taxid": 291187,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4328,
                "matched_fragments": 415,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanihabitans sediminis",
                "strain": "strain=S9-10",
                "accession": "GCA_003337215.1",
                "taxid": 1812012,
                "species_taxid": 1812012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3893,
                "matched_fragments": 328,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bizionia echini",
                "strain": "strain=DSM 23925",
                "accession": "GCA_900115185.1",
                "taxid": 649333,
                "species_taxid": 649333,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3735,
                "matched_fragments": 376,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacinutrix himadriensis",
                "strain": "strain=E4-9a",
                "accession": "GCA_001418105.1",
                "taxid": 641549,
                "species_taxid": 641549,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2993,
                "matched_fragments": 400,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanstruepera flava",
                "strain": "strain=NBU2984",
                "accession": "GCA_023634025.1",
                "taxid": 2930218,
                "species_taxid": 2930218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2883,
                "matched_fragments": 367,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bizionia myxarmorum",
                "strain": "strain=ADA-4",
                "accession": "GCA_008086205.1",
                "taxid": 291186,
                "species_taxid": 291186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2576,
                "matched_fragments": 332,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanstruepera marina",
                "strain": "strain=NBU2968",
                "accession": "GCA_019880635.1",
                "taxid": 2873265,
                "species_taxid": 2873265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1949,
                "matched_fragments": 372,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Winogradskyella litoriviva",
                "strain": "strain=KMM6491",
                "accession": "GCA_013249065.1",
                "taxid": 1220182,
                "species_taxid": 1220182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0309,
                "matched_fragments": 291,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanstruepera neustonica",
                "strain": "strain=JCM19743",
                "accession": "GCA_002895005.1",
                "taxid": 1445657,
                "species_taxid": 1445657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9712,
                "matched_fragments": 300,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenitalea lutea",
                "strain": "strain=CGMCC 1.12213",
                "accession": "GCA_900141715.1",
                "taxid": 1178825,
                "species_taxid": 1178825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9557,
                "matched_fragments": 285,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bizionia argentinensis",
                "strain": "strain=JUB59",
                "accession": "GCA_000224335.2",
                "taxid": 456455,
                "species_taxid": 456455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9372,
                "matched_fragments": 287,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenitalea lutea",
                "strain": "strain=P7-3-5",
                "accession": "GCA_000283015.1",
                "taxid": 1178825,
                "species_taxid": 1178825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9232,
                "matched_fragments": 283,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter amylolyticus",
                "strain": "strain=DSM 29199",
                "accession": "GCA_014202225.1",
                "taxid": 1608400,
                "species_taxid": 1608400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9192,
                "matched_fragments": 277,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter amylolyticus",
                "strain": "strain=RU-4-M-4",
                "accession": "GCA_007559325.1",
                "taxid": 1608400,
                "species_taxid": 1608400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9013,
                "matched_fragments": 276,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter amylolyticus",
                "strain": "strain=RU-4-M-4",
                "accession": "GCA_008630605.1",
                "taxid": 1608400,
                "species_taxid": 1608400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8655,
                "matched_fragments": 279,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Winogradskyella echinorum",
                "strain": "strain=KCTC 22026",
                "accession": "GCA_014284085.1",
                "taxid": 538189,
                "species_taxid": 538189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8285,
                "matched_fragments": 269,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seonamhaeicola maritimus",
                "strain": "strain=1505",
                "accession": "GCA_008056315.1",
                "taxid": 2591822,
                "species_taxid": 2591822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8208,
                "matched_fragments": 237,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Winogradskyella echinorum",
                "strain": "strain=KCTC 22026",
                "accession": "GCA_014297365.1",
                "taxid": 538189,
                "species_taxid": 538189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8158,
                "matched_fragments": 270,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter pacificus",
                "strain": "strain=H164",
                "accession": "GCA_008033385.1",
                "taxid": 2599389,
                "species_taxid": 2599389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7923,
                "matched_fragments": 258,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Winogradskyella thalassocola",
                "strain": "strain=DSM 15363",
                "accession": "GCA_900099995.1",
                "taxid": 262004,
                "species_taxid": 262004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7754,
                "matched_fragments": 288,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Winogradskyella marina",
                "strain": "strain=F6397",
                "accession": "GCA_015645385.1",
                "taxid": 2785530,
                "species_taxid": 2785530,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6532,
                "matched_fragments": 281,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter pectinivorans",
                "strain": "strain=DSM 25730",
                "accession": "GCA_900112595.1",
                "taxid": 870482,
                "species_taxid": 870482,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5911,
                "matched_fragments": 260,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter aestuarii",
                "strain": "strain=KCTC 23449",
                "accession": "GCA_006148925.1",
                "taxid": 912802,
                "species_taxid": 912802,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5714,
                "matched_fragments": 240,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hyunsoonleella ulvae",
                "strain": "strain=HU1-3",
                "accession": "GCA_016827605.1",
                "taxid": 2799948,
                "species_taxid": 2799948,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1996,
                "matched_fragments": 217,
                "total_fragments": 990,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008084905.1",
                "gtdb_species": "s__Xanthomarina maritima",
                "ani": 100.0,
                "matched_fragments": 985,
                "total_fragments": 990,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003148645.1",
                "gtdb_species": "s__Xanthomarina spongicola",
                "ani": 84.1628,
                "matched_fragments": 754,
                "total_fragments": 990,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003144015.1",
                "gtdb_species": "s__Xanthomarina sp003144015",
                "ani": 82.066,
                "matched_fragments": 731,
                "total_fragments": 990,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002366675.1",
                "gtdb_species": "s__Xanthomarina sp002366675",
                "ani": 81.9033,
                "matched_fragments": 500,
                "total_fragments": 990,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014638915.1",
                "gtdb_species": "s__Xanthomarina arctica",
                "ani": 80.7166,
                "matched_fragments": 654,
                "total_fragments": 990,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000348685.1",
                "gtdb_species": "s__Xanthomarina gelatinilytica",
                "ani": 80.5539,
                "matched_fragments": 600,
                "total_fragments": 990,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "98.31",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014641635.1",
                "gtdb_species": "s__Aquaticitalea lipolytica",
                "ani": 78.5555,
                "matched_fragments": 358,
                "total_fragments": 990,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquaticitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018860825.1",
                "gtdb_species": "s__Oceanihabitans sp018860825",
                "ani": 78.5064,
                "matched_fragments": 408,
                "total_fragments": 990,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Oceanihabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900114265.1",
                "gtdb_species": "s__Flaviramulus basaltis",
                "ani": 78.2266,
                "matched_fragments": 330,
                "total_fragments": 990,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flaviramulus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.311,
        "cell_length": 0.123,
        "doubling_h": null,
        "growth_tmp": 24.666,
        "optimum_tmp": 25.0,
        "optimum_ph": 7.5,
        "genome_size": 3994485.75,
        "gc_content": 34.36,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.6,
        "range_salinity": null,
        "facultative_respiration": 0.6,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.4,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Formosa",
        "maritima"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}