{ "type": "genome", "identifier": "GCF_008085305.1", "organism": "Aggregatibacter actinomycetemcomitans", "title": "Aggregatibacter actinomycetemcomitans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Molecular Medicine (MOMA) - Aarhus University Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008085305.1", "bioproject": "PRJNA224116", "biosample": "SAMN12492020", "wgs_master": "VSDU00000000.1", "refseq_category": "na", "taxid": "714", "species_taxid": "714", "organism_name": "Aggregatibacter actinomycetemcomitans", "infraspecific_name": "strain=NCTC_9710", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/24", "asm_name": "ASM808530v1", "asm_submitter": "Department of Molecular Medicine (MOMA) - Aarhus University Hospital", "gbrs_paired_asm": "GCA_008085305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/085/305/GCF_008085305.1_ASM808530v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2069548", "genome_size_ungapped": "2069548", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-17", "total_gene_count": "2088", "protein_coding_gene_count": "1917", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-24", "dateModified": "2019-08-24", "datePublished": "2019-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Aggregatibacter actinomycetemcomitans" ], "sample_taxid": [ "714" ], 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95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "96.75", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_017160915.1", "gtdb_species": "s__Aggregatibacter actinomycetemcomitans_B", "ani": 91.857, "matched_fragments": 567, "total_fragments": 671, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003129965.1", "gtdb_species": "s__Aggregatibacter kilianii_A", "ani": 85.8349, "matched_fragments": 578, "total_fragments": 671, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003130255.1", "gtdb_species": "s__Aggregatibacter kilianii", "ani": 81.8282, "matched_fragments": 500, "total_fragments": 671, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_003130075.1", "gtdb_species": "s__Aggregatibacter segnis_A", "ani": 81.7747, "matched_fragments": 446, "total_fragments": 671, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter", "ani_circumscription_radius": 95.0, 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"mean_intra_species_ani": "95.63", "min_intra_species_ani": "95.17", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002000545.1", "gtdb_species": "s__Rodentibacter trehalosifermentans", "ani": 77.8806, "matched_fragments": 192, "total_fragments": 671, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.00", "min_intra_species_ani": "97.91", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": -0.222, "doubling_h": null, "growth_tmp": 36.5, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2139861.133, "gc_content": 44.089, "coding_genes": 2120.2, "rRNA16S_genes": 6.0, "tRNA_genes": 53.444, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aggregatibacter", "actinomycetemcomitans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }