{ "type": "genome", "identifier": "GCF_008086545.1", "organism": "Spiroplasma chinense", "title": "Spiroplasma chinense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008086545.1", "bioproject": "PRJNA224116", "biosample": "SAMN12559111", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "216932", "species_taxid": "216932", "organism_name": "Spiroplasma chinense", "infraspecific_name": "strain=CCH", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/26", "asm_name": "ASM808654v1", "asm_submitter": "Academia Sinica", "gbrs_paired_asm": "GCA_008086545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/086/545/GCF_008086545.1_ASM808654v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1370182", "genome_size_ungapped": "1370182", "gc_percent": "28.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008086545.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "1258", "protein_coding_gene_count": "1217", "non_coding_gene_count": "39", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-26", "dateModified": "2019-08-26", "datePublished": "2019-08-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Spiroplasma chinense" ], "sample_taxid": [ "216932" ], "sample_host_organism": [ "Calystegia hederacea" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Jiangsu" ], "sample_host_location_id": [], "data_size": "0.366 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1370182", "Number of Sequences": "1", "Longest Sequences (bp)": "1370182", "N50 (bp)": "1370182", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.9", "Number of CDSs": "2390", "Average Protein Length": "131.8", "Coding Ratio (%)": "68.9", "Number of rRNAs": "6", "Number of tRNAs": "30", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spiroplasma chinense", "strain": "strain=CCH", "accession": "GCA_008086545.1", "taxid": 216932, "species_taxid": 216932, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 456, "total_fragments": 456, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spiroplasma culicicola", "strain": "strain=AES-1", "accession": "GCA_000565175.1", "taxid": 216935, "species_taxid": 216935, "relation_to_type": "type", "validated": true, "ani": 80.3287, "matched_fragments": 191, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma diminutum", "strain": "strain=CUAS-1", "accession": "GCA_000439455.1", "taxid": 216936, "species_taxid": 216936, "relation_to_type": "type", "validated": true, "ani": 79.3234, "matched_fragments": 141, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma gladiatoris", "strain": "strain=TG-1", "accession": "GCA_004379335.1", "taxid": 2143, "species_taxid": 2143, "relation_to_type": "type", "validated": true, "ani": 79.2103, "matched_fragments": 137, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma cantharicola", "strain": "strain=CC-1", "accession": "GCA_001281045.1", "taxid": 362837, "species_taxid": 362837, "relation_to_type": "type", "validated": true, "ani": 79.1424, "matched_fragments": 121, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma floricola", "strain": "strain=23-6", "accession": "GCA_002813555.1", "taxid": 216937, "species_taxid": 216937, "relation_to_type": "type", "validated": true, "ani": 78.8051, "matched_fragments": 146, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma tabanidicola", "strain": "strain=TAUS-1", "accession": "GCA_009730595.1", "taxid": 324079, "species_taxid": 324079, "relation_to_type": "type", "validated": true, "ani": 78.7078, "matched_fragments": 148, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma taiwanense", "strain": "strain=CT-1", "accession": "GCA_000439435.1", "taxid": 2145, "species_taxid": 2145, "relation_to_type": "type", "validated": true, "ani": 78.5333, "matched_fragments": 128, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasma cottewii", "strain": "strain=VIS", "accession": "GCA_024918975.1", "taxid": 51364, "species_taxid": 51364, "relation_to_type": "type", "validated": true, "ani": 78.0787, "matched_fragments": 53, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma clarkii", "strain": "strain=CN-5", "accession": "GCA_002795265.1", "taxid": 2139, "species_taxid": 2139, "relation_to_type": "type", "validated": true, "ani": 77.9086, "matched_fragments": 137, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma clarkii", "strain": "strain=CN-5", "accession": "GCA_002163565.1", "taxid": 2139, "species_taxid": 2139, "relation_to_type": "type", "validated": true, "ani": 77.888, "matched_fragments": 135, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma corruscae", "strain": "strain=EC-1", "accession": "GCA_002237575.1", "taxid": 216934, "species_taxid": 216934, "relation_to_type": "type", "validated": true, "ani": 77.5006, "matched_fragments": 76, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoplasma tabanidae", "strain": "strain=BARC 857", "accession": "GCA_002804025.1", "taxid": 219745, "species_taxid": 219745, "relation_to_type": "type", "validated": true, "ani": 77.4971, "matched_fragments": 52, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Entomoplasma melaleucae", "strain": "strain=M1", "accession": "GCA_002804105.1", "taxid": 81459, "species_taxid": 81459, "relation_to_type": "type", "validated": true, "ani": 77.2463, "matched_fragments": 52, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Entomoplasma melaleucae", "strain": "strain=ATCC 49191", "accession": "GCA_000685885.1", "taxid": 81459, "species_taxid": 81459, "relation_to_type": "type", "validated": true, "ani": 76.5536, "matched_fragments": 56, "total_fragments": 456, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008086545.1", "gtdb_species": "s__Spiroplasma_A chinense", "ani": 100.0, "matched_fragments": 456, "total_fragments": 456, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Spiroplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000565175.1", "gtdb_species": "s__Spiroplasma_A culicicola", "ani": 80.3587, "matched_fragments": 190, "total_fragments": 456, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Spiroplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010365805.1", "gtdb_species": "s__Spiroplasma_A sp010365805", "ani": 80.0137, "matched_fragments": 142, "total_fragments": 456, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Spiroplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000439455.1", "gtdb_species": "s__Spiroplasma_A diminutum", "ani": 79.3582, "matched_fragments": 140, "total_fragments": 456, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Spiroplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004379335.1", "gtdb_species": "s__Spiroplasma_A gladiatoris", "ani": 79.2103, "matched_fragments": 137, "total_fragments": 456, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Spiroplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001281045.1", "gtdb_species": "s__Spiroplasma_A cantharicola", "ani": 79.1223, "matched_fragments": 122, "total_fragments": 456, "gtdb_taxonomy": 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