{
    "type": "genome",
    "identifier": "GCF_008086625.1",
    "organism": "Acetobacterium bakii",
    "title": "Acetobacterium bakii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Trento",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008086625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10590629",
        "wgs_master": "RXYC00000000.1",
        "refseq_category": "na",
        "taxid": "52689",
        "species_taxid": "52689",
        "organism_name": "Acetobacterium bakii",
        "infraspecific_name": "strain=DSM 8239",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/26",
        "asm_name": "ASM808662v1",
        "asm_submitter": "University of Trento",
        "gbrs_paired_asm": "GCA_008086625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/086/625/GCF_008086625.1_ASM808662v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4163517",
        "genome_size_ungapped": "4163517",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "43",
        "contig_count": "43",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008086625.1-RS_2024_04_14",
        "annotation_date": "2024-04-14",
        "total_gene_count": "3907",
        "protein_coding_gene_count": "3800",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-26",
    "dateModified": "2019-08-26",
    "datePublished": "2019-08-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acetobacterium bakii"
        ],
        "sample_taxid": [
            "52689"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.178 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4163517",
        "Number of Sequences": "43",
        "Longest Sequences (bp)": "747184",
        "N50 (bp)": "285194",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.2",
        "Number of CDSs": "3870",
        "Average Protein Length": "308.7",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Acetobacterium bakii",
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                "accession": "GCA_008086625.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1367,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acetobacterium bakii",
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                "accession": "GCA_001263355.1",
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                "validated": true,
                "ani": 99.9659,
                "matched_fragments": 1320,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acetobacterium paludosum",
                "strain": "strain=DSM 8237",
                "accession": "GCA_008086595.1",
                "taxid": 52693,
                "species_taxid": 52693,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7704,
                "matched_fragments": 372,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacterium dehalogenans",
                "strain": "strain=DSM 11527",
                "accession": "GCA_000472665.1",
                "taxid": 82116,
                "species_taxid": 82116,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacterium wieringae",
                "strain": "strain=DSM 1911",
                "accession": "GCA_001766835.1",
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                "species_taxid": 52694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1631,
                "matched_fragments": 328,
                "total_fragments": 1369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacterium woodii",
                "strain": "strain=DSM 1030",
                "accession": "GCA_000247605.1",
                "taxid": 33952,
                "species_taxid": 33952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9711,
                "matched_fragments": 338,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium limosum",
                "strain": "strain=ATCC 8486",
                "accession": "GCA_000807675.2",
                "taxid": 1736,
                "species_taxid": 1736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4246,
                "matched_fragments": 50,
                "total_fragments": 1369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium callanderi",
                "strain": "strain=FD",
                "accession": "GCA_900142645.1",
                "taxid": 53442,
                "species_taxid": 53442,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 54,
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 4.17,
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                "accession": "GCF_001263355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Acetobacterium",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Acetobacterium",
                "ani_circumscription_radius": 95.0,
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                "accession": "GCF_008086615.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Acetobacterium",
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            },
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            },
            {
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    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}