{ "type": "genome", "identifier": "GCF_008087085.1", "organism": "Nocardioides rubriscoriae", "title": "Nocardioides rubriscoriae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008087085.1", "bioproject": "PRJNA224116", "biosample": "SAMN12168200", "wgs_master": "VIYJ00000000.1", "refseq_category": "reference genome", "taxid": "642762", "species_taxid": "642762", "organism_name": "Nocardioides rubriscoriae", "infraspecific_name": "strain=DSM 23986", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/26", "asm_name": "ASM808708v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_008087085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/087/085/GCF_008087085.1_ASM808708v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4827237", "genome_size_ungapped": "4827237", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008087085.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4605", "protein_coding_gene_count": "4527", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-26", "dateModified": "2019-08-26", "datePublished": "2019-08-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides rubriscoriae" ], "sample_taxid": [ "642762" ], "sample_host_organism": [ "no collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.269 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4827237", "Number of Sequences": "29", "Longest Sequences (bp)": "727133", "N50 (bp)": "540507", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.4", "Number of CDSs": "4615", "Average Protein Length": "321.4", "Coding Ratio (%)": "92.2", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides rubriscoriae", "strain": "strain=DSM 23986", "accession": "GCA_008087085.1", "taxid": 642762, "species_taxid": 642762, 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82.0584, "matched_fragments": 881, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 81.9648, "matched_fragments": 850, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.8824, "matched_fragments": 865, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015070765.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.8546, "matched_fragments": 871, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 81.7892, "matched_fragments": 859, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides psychrotolerans", "strain": "strain=NBRC 108563", "accession": "GCA_007992415.1", "taxid": 1005945, "species_taxid": 1005945, "relation_to_type": "type", "validated": true, "ani": 81.627, "matched_fragments": 879, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides psychrotolerans", "strain": "strain=CGMCC 1.11156", "accession": "GCA_900113685.1", "taxid": 1005945, "species_taxid": 1005945, "relation_to_type": "type", "validated": true, "ani": 81.6252, "matched_fragments": 884, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 81.395, "matched_fragments": 807, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 81.3553, "matched_fragments": 916, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 81.3535, "matched_fragments": 911, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { 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