{ "type": "genome", "identifier": "GCF_008122265.1", "organism": "Marinobacter fonticola", "title": "Marinobacter fonticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Oceanology, Chinese academy of sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008122265.1", "bioproject": "PRJNA224116", "biosample": "SAMN12612374", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2603215", "species_taxid": "2603215", "organism_name": "Marinobacter fonticola", "infraspecific_name": "strain=CS412", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/28", "asm_name": "ASM812226v1", "asm_submitter": "Institute of Oceanology, Chinese academy of sciences", "gbrs_paired_asm": "GCA_008122265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/122/265/GCF_008122265.1_ASM812226v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4543926", "genome_size_ungapped": "4543926", "gc_percent": "58.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008122265.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "4052", "protein_coding_gene_count": "3958", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-28", "dateModified": "2019-08-28", "datePublished": "2019-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter fonticola" ], "sample_taxid": [ "2603215" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: South China Sea" ], "sample_host_location_id": [], "data_size": "1.290 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4543926", "Number of Sequences": "1", "Longest Sequences (bp)": "4543926", "N50 (bp)": "4543926", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.0", "Number of CDSs": "4074", "Average Protein Length": "325.5", "Coding Ratio (%)": "87.6", "Number of rRNAs": "9", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter fonticola", "strain": "strain=CS412", "accession": "GCA_008122265.1", "taxid": 2603215, "species_taxid": 2603215, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1513, "total_fragments": 1514, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter nanhaiticus", "strain": "strain=D15-8W", "accession": "GCA_000364845.1", "taxid": 1305740, "species_taxid": 1305740, "relation_to_type": "type", "validated": true, "ani": 80.8842, "matched_fragments": 922, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bohaiensis", "strain": "strain=T17", "accession": "GCA_003258515.1", "taxid": 2201898, "species_taxid": 2201898, "relation_to_type": "type", "validated": true, "ani": 79.8446, "matched_fragments": 643, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mangrovi", "strain": "strain=CHFG3-1-5", "accession": "GCA_016798325.1", "taxid": 2803918, "species_taxid": 2803918, "relation_to_type": "type", "validated": true, "ani": 79.7486, "matched_fragments": 656, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halodurans", "strain": "strain=YJ-S3-2", "accession": "GCA_004327985.1", "taxid": 2528979, "species_taxid": 2528979, "relation_to_type": "type", "validated": true, "ani": 79.5718, "matched_fragments": 665, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinus", "strain": "strain=Hb8", "accession": "GCA_001854125.1", "taxid": 1874317, "species_taxid": 1874317, "relation_to_type": "type", "validated": true, "ani": 78.3639, "matched_fragments": 218, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 78.3413, "matched_fragments": 289, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter subterrani", "strain": "strain=JG233", "accession": "GCA_001045555.1", "taxid": 1658765, "species_taxid": 1658765, "relation_to_type": "type", "validated": true, "ani": 78.1751, "matched_fragments": 331, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 78.0483, "matched_fragments": 254, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lipolyticus", "strain": "strain=SM19", "accession": "GCA_000397065.2", "taxid": 209639, "species_taxid": 209639, "relation_to_type": "type", "validated": true, "ani": 78.0352, "matched_fragments": 278, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 77.9612, "matched_fragments": 245, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mobilis", "strain": "strain=CGMCC 1.7059", "accession": "GCA_900106945.1", "taxid": 488533, "species_taxid": 488533, "relation_to_type": "type", "validated": true, "ani": 77.6736, "matched_fragments": 257, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter caseinilyticus", "strain": "strain=M3-13", "accession": "GCA_011074955.1", "taxid": 2692195, "species_taxid": 2692195, "relation_to_type": "type", "validated": true, "ani": 77.6269, "matched_fragments": 281, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 76.9734, "matched_fragments": 121, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.424, "matched_fragments": 55, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_022341445.1", "taxid": 321266, "species_taxid": 321266, "relation_to_type": "type", "validated": true, "ani": 76.3074, "matched_fragments": 101, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008122265.1", "gtdb_species": "s__Marinobacter_A fonticola", "ani": 100.0, "matched_fragments": 1514, "total_fragments": 1514, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000364845.1", "gtdb_species": "s__Marinobacter_A nanhaiticus", "ani": 80.8804, "matched_fragments": 922, "total_fragments": 1514, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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