{ "type": "genome", "identifier": "GCF_008123425.1", "organism": "Bradyrhizobium rifense", "title": "Bradyrhizobium rifense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LMU Munich", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008123425.1", "bioproject": "PRJNA224116", "biosample": "SAMN12600330", "wgs_master": "VSSS00000000.1", "refseq_category": "reference genome", "taxid": "515499", "species_taxid": "515499", "organism_name": "Bradyrhizobium rifense", "infraspecific_name": "strain=CTAW71", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/28", "asm_name": "ASM812342v1", "asm_submitter": "LMU Munich", "gbrs_paired_asm": "GCA_008123425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/123/425/GCF_008123425.1_ASM812342v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9952932", "genome_size_ungapped": "9952715", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "140", "contig_count": "140", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008123425.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "9451", "protein_coding_gene_count": "9133", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-28", "dateModified": "2019-08-28", "datePublished": "2019-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium rifense" ], "sample_taxid": [ "515499" ], "sample_host_organism": [ "Cytisus villosus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Morocco: Aoudal" ], "sample_host_location_id": [], "data_size": "2.776 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9952932", "Number of Sequences": "140", "Longest Sequences (bp)": "346735", "N50 (bp)": "152866", "Gap Ratio (%)": "0.002321", "GCcontent (%)": "63.0", "Number of CDSs": "9527", "Average Protein Length": "295.7", "Coding Ratio (%)": "84.9", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium rifense", "strain": "strain=CTAW71", "accession": "GCA_008123425.1", "taxid": 515499, "species_taxid": 515499, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3242, "total_fragments": 3247, "ani_threshold": 95, 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diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 88.2762, "matched_fragments": 2051, "total_fragments": 3247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000472985.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 88.2617, "matched_fragments": 2074, "total_fragments": 3247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000284375.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 88.2567, "matched_fragments": 2077, "total_fragments": 3247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=PL7HG1", "accession": "GCA_008932115.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 88.2267, "matched_fragments": 1801, "total_fragments": 3247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA110", "accession": "GCA_000011365.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 88.2057, "matched_fragments": 2058, "total_fragments": 3247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 88.1955, "matched_fragments": 1797, "total_fragments": 3247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium stylosanthis", "strain": "strain=BR 446", "accession": "GCA_001641335.1", "taxid": 1803665, 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