{ "type": "genome", "identifier": "GCF_008124675.1", "organism": "Xenorhabdus doucetiae", "title": "Xenorhabdus doucetiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008124675.1", "bioproject": "PRJNA224116", "biosample": "SAMN12255866", "wgs_master": "VNHN00000000.1", "refseq_category": "na", "taxid": "351671", "species_taxid": "351671", "organism_name": "Xenorhabdus doucetiae", "infraspecific_name": "strain=DSM 17909", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/29", "asm_name": "ASM812467v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_008124675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/124/675/GCF_008124675.1_ASM812467v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4016319", "genome_size_ungapped": "4008780", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "142", "contig_count": "142", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008124675.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "3656", "protein_coding_gene_count": "3472", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-29", "dateModified": "2019-08-29", "datePublished": "2019-08-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Xenorhabdus doucetiae" ], "sample_taxid": [ "351671" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.146 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4016319", "Number of Sequences": "142", "Longest Sequences (bp)": "162278", "N50 (bp)": "56224", "Gap Ratio (%)": "0.187709", "GCcontent (%)": "45.5", "Number of CDSs": "3362", "Average Protein Length": "328.3", "Coding Ratio (%)": "82.4", "Number of rRNAs": "7", "Number of tRNAs": "62", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xenorhabdus doucetiae", "strain": "strain=DSM 17909", "accession": "GCA_008124675.1", "taxid": 351671, "species_taxid": 351671, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1257, "total_fragments": 1268, 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