{ "type": "genome", "identifier": "GCF_008124785.1", "organism": "Aquimarina intermedia", "title": "Aquimarina intermedia", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008124785.1", "bioproject": "PRJNA224116", "biosample": "SAMN12255749", "wgs_master": "VNHU00000000.1", "refseq_category": "reference genome", "taxid": "350814", "species_taxid": "350814", "organism_name": "Aquimarina intermedia", "infraspecific_name": "strain=DSM 17527", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/29", "asm_name": "ASM812478v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_008124785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/124/785/GCF_008124785.1_ASM812478v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3494383", "genome_size_ungapped": "3494383", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008124785.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3148", "protein_coding_gene_count": "3083", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-29", "dateModified": "2019-08-29", "datePublished": "2019-08-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquimarina intermedia" ], "sample_taxid": [ "350814" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia" ], "sample_host_location_id": [], "data_size": "0.988 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3494383", "Number of Sequences": "29", "Longest Sequences (bp)": "620834", "N50 (bp)": "296688", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.1", "Number of CDSs": "3066", "Average Protein Length": "332.8", "Coding Ratio (%)": "87.6", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquimarina intermedia", "strain": "strain=DSM 17527", "accession": "GCA_008124785.1", "taxid": 350814, "species_taxid": 350814, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1149, "total_fragments": 1149, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aquimarina megaterium", "strain": "strain=XH134", "accession": "GCA_000520975.1", "taxid": 1443666, "species_taxid": 1443666, "relation_to_type": "type", "validated": true, "ani": 77.7774, "matched_fragments": 218, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina amphilecti", "strain": "strain=DSM 25232", "accession": "GCA_900109375.1", "taxid": 1038014, "species_taxid": 1038014, "relation_to_type": "type", "validated": true, "ani": 77.7761, "matched_fragments": 214, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina atlantica", "strain": "strain=22II-S11-z7", "accession": "GCA_000626715.1", "taxid": 1317122, "species_taxid": 1317122, "relation_to_type": "type", "validated": true, "ani": 77.6354, "matched_fragments": 216, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina aggregata", "strain": "strain=RZW4-3-2", "accession": "GCA_001632745.1", "taxid": 1642818, "species_taxid": 1642818, "relation_to_type": "type", "validated": true, "ani": 77.5332, "matched_fragments": 203, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": "strain=KCTC 12285", "accession": "GCA_014651355.1", "taxid": 279356, "species_taxid": 279356, "relation_to_type": "type", "validated": true, "ani": 77.5281, "matched_fragments": 235, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": "strain=DSM 19832", "accession": "GCA_000430665.1", "taxid": 279356, "species_taxid": 279356, "relation_to_type": "type", "validated": true, "ani": 77.5218, "matched_fragments": 235, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina latercula", "strain": "strain=DSM 2041", "accession": "GCA_000430645.1", "taxid": 987, "species_taxid": 987, "relation_to_type": "type", "validated": true, "ani": 77.5108, "matched_fragments": 233, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina pacifica", "strain": "strain=SW150", "accession": "GCA_000520955.1", "taxid": 1296415, "species_taxid": 1296415, "relation_to_type": "type", "validated": true, "ani": 77.4782, "matched_fragments": 191, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina sediminis", "strain": "strain=w01", "accession": "GCA_002895435.1", "taxid": 2070536, "species_taxid": 2070536, "relation_to_type": "type", "validated": true, "ani": 77.4463, "matched_fragments": 222, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina macrocephali", "strain": "strain=JAMB N27", "accession": "GCA_000520995.1", "taxid": 666563, "species_taxid": 666563, "relation_to_type": "type", "validated": true, "ani": 77.4124, "matched_fragments": 213, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina longa", "strain": "strain=SW024", "accession": "GCA_001401755.1", "taxid": 1080221, "species_taxid": 1080221, "relation_to_type": "type", "validated": true, "ani": 77.3943, "matched_fragments": 231, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina algicola", "strain": "strain=M625", "accession": "GCA_006443095.1", "taxid": 2589995, "species_taxid": 2589995, "relation_to_type": "type", "validated": true, "ani": 77.2449, "matched_fragments": 227, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 77.2245, "matched_fragments": 74, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=SW033", "accession": "GCA_004310335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 77.0612, "matched_fragments": 64, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 76.7352, "matched_fragments": 89, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.7001, "matched_fragments": 90, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.6174, "matched_fragments": 89, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium filum", "strain": "strain=DSM 17961", "accession": "GCA_000425465.1", "taxid": 370974, "species_taxid": 370974, "relation_to_type": "type", "validated": true, "ani": 76.5868, "matched_fragments": 51, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 76.466, "matched_fragments": 51, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium frigoris", "strain": "strain=DSM 15719", "accession": "GCA_900111075.1", "taxid": 229204, "species_taxid": 229204, "relation_to_type": "type", "validated": true, "ani": 76.3784, "matched_fragments": 54, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.2366, "matched_fragments": 93, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum luteum", "strain": "strain=SM1352", "accession": "GCA_003449015.1", "taxid": 1548456, "species_taxid": 1548456, "relation_to_type": "type", "validated": true, "ani": 76.023, "matched_fragments": 60, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008124785.1", "gtdb_species": "s__Aquimarina intermedia", "ani": 100.0, "matched_fragments": 1149, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900299525.1", "gtdb_species": "s__Aquimarina sp900299525", "ani": 77.7988, "matched_fragments": 217, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008370685.1", "gtdb_species": "s__Aquimarina sp008370685", "ani": 77.7799, "matched_fragments": 193, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000520975.1", "gtdb_species": "s__Aquimarina megaterium", "ani": 77.7725, "matched_fragments": 219, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002846555.1", "gtdb_species": "s__Aquimarina sp002846555", "ani": 77.7644, "matched_fragments": 229, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109375.1", "gtdb_species": "s__Aquimarina amphilecti", "ani": 77.7611, "matched_fragments": 215, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018100805.1", "gtdb_species": "s__Aquimarina sp018100805", "ani": 77.7382, "matched_fragments": 223, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900312745.1", "gtdb_species": "s__Aquimarina sp900312745", "ani": 77.6881, "matched_fragments": 233, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.61", "min_intra_species_ani": "95.54", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900299505.1", "gtdb_species": "s__Aquimarina sp900299505", "ani": 77.5454, "matched_fragments": 239, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000430645.1", "gtdb_species": "s__Aquimarina latercula", "ani": 77.5273, "matched_fragments": 231, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003443675.1", "gtdb_species": "s__Aquimarina sp003443675", "ani": 77.5246, "matched_fragments": 229, "total_fragments": 1149, "gtdb_taxonomy": 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