{
    "type": "genome",
    "identifier": "GCF_008124865.1",
    "organism": "Fodinibius salinus",
    "title": "Fodinibius salinus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008124865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05661001",
        "wgs_master": "VNHY00000000.1",
        "refseq_category": "reference genome",
        "taxid": "860790",
        "species_taxid": "860790",
        "organism_name": "Fodinibius salinus",
        "infraspecific_name": "strain=DSM 21935",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/29",
        "asm_name": "ASM812486v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_008124865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/124/865/GCF_008124865.1_ASM812486v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2861751",
        "genome_size_ungapped": "2861751",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008124865.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2592",
        "protein_coding_gene_count": "2537",
        "non_coding_gene_count": "44",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-29",
    "dateModified": "2019-08-29",
    "datePublished": "2019-08-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fodinibius salinus"
        ],
        "sample_taxid": [
            "860790"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.817 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2861751",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "1080204",
        "N50 (bp)": "954298",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.5",
        "Number of CDSs": "2538",
        "Average Protein Length": "333.2",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Fodinibius salinus",
                "strain": "strain=DSM 21935",
                "accession": "GCA_008124865.1",
                "taxid": 860790,
                "species_taxid": 860790,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 951,
                "total_fragments": 951,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aliifodinibius halophilus",
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                "accession": "GCA_011059105.1",
                "taxid": 1736908,
                "species_taxid": 1736908,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6177,
                "matched_fragments": 203,
                "total_fragments": 951,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliifodinibius roseus",
                "strain": "strain=DSM 21986",
                "accession": "GCA_900129315.1",
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                "species_taxid": 1194090,
                "relation_to_type": "type",
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                "total_fragments": 951,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliifodinibius sediminis",
                "strain": "strain=DSM 21194",
                "accession": "GCA_900182555.1",
                "taxid": 1214077,
                "species_taxid": 1214077,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 105,
                "total_fragments": 951,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_008124865.1",
                "gtdb_species": "s__Fodinibius salinus",
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                "matched_fragments": 951,
                "total_fragments": 951,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Fodinibius",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002287075.1",
                "gtdb_species": "s__Fodinibius sp002287075",
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                "matched_fragments": 199,
                "total_fragments": 951,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Fodinibius",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011059105.1",
                "gtdb_species": "s__Fodinibius halophilus",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Fodinibius",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129315.1",
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                "matched_fragments": 74,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Aliifodinibius",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900182555.1",
                "gtdb_species": "s__Aliifodinibius sediminis",
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                "matched_fragments": 105,
                "total_fragments": 951,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Aliifodinibius",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016937115.1",
                "gtdb_species": "s__SMO-BIN1 sp016937115",
                "ani": 76.2377,
                "matched_fragments": 52,
                "total_fragments": 951,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__SMO-BIN1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.75,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Fodinibius",
        "salinus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}