{
    "type": "genome",
    "identifier": "GCF_008124875.1",
    "organism": "Tenacibaculum adriaticum",
    "title": "Tenacibaculum adriaticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008124875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12255867",
        "wgs_master": "VNIA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "413713",
        "species_taxid": "413713",
        "organism_name": "Tenacibaculum adriaticum",
        "infraspecific_name": "strain=DSM 18961",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/29",
        "asm_name": "ASM812487v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_008124875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/124/875/GCF_008124875.1_ASM812487v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3211939",
        "genome_size_ungapped": "3211555",
        "gc_percent": "31.000000",
        "replicon_count": "0",
        "scaffold_count": "21",
        "contig_count": "21",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008124875.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2966",
        "protein_coding_gene_count": "2905",
        "non_coding_gene_count": "44",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-29",
    "dateModified": "2019-08-29",
    "datePublished": "2019-08-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tenacibaculum adriaticum"
        ],
        "sample_taxid": [
            "413713"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Croatia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.887 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3211939",
        "Number of Sequences": "21",
        "Longest Sequences (bp)": "1152566",
        "N50 (bp)": "794133",
        "Gap Ratio (%)": "0.011955",
        "GCcontent (%)": "31.2",
        "Number of CDSs": "2912",
        "Average Protein Length": "333.1",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Tenacibaculum adriaticum",
                "strain": "strain=DSM 18961",
                "accession": "GCA_008124875.1",
                "taxid": 413713,
                "species_taxid": 413713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1059,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tenacibaculum lutimaris",
                "strain": "strain=DSM 16505",
                "accession": "GCA_003610735.1",
                "taxid": 285258,
                "species_taxid": 285258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2485,
                "matched_fragments": 421,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum pelagium",
                "strain": "strain=S7007",
                "accession": "GCA_014062345.1",
                "taxid": 2759527,
                "species_taxid": 2759527,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0895,
                "matched_fragments": 444,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum discolor",
                "strain": "strain=DSM 18842",
                "accession": "GCA_003664185.1",
                "taxid": 361581,
                "species_taxid": 361581,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0522,
                "matched_fragments": 439,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum caenipelagi",
                "strain": "strain=CECT 8283",
                "accession": "GCA_004363005.1",
                "taxid": 1325435,
                "species_taxid": 1325435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0223,
                "matched_fragments": 417,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum haliotis",
                "strain": "strain=KCTC 52419",
                "accession": "GCA_025215075.1",
                "taxid": 1888914,
                "species_taxid": 1888914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.893,
                "matched_fragments": 435,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum singaporense",
                "strain": "strain=DSM 106434",
                "accession": "GCA_003867015.1",
                "taxid": 2358479,
                "species_taxid": 2358479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.849,
                "matched_fragments": 421,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum mesophilum",
                "strain": "strain=DSM 13764",
                "accession": "GCA_009362255.1",
                "taxid": 104268,
                "species_taxid": 104268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7626,
                "matched_fragments": 410,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum mesophilum",
                "strain": "strain=DSM 13764",
                "accession": "GCA_900129475.1",
                "taxid": 104268,
                "species_taxid": 104268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7124,
                "matched_fragments": 407,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum mesophilum",
                "strain": "strain=DSM 13764",
                "accession": "GCA_003867075.1",
                "taxid": 104268,
                "species_taxid": 104268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7059,
                "matched_fragments": 415,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum ovolyticum",
                "strain": "strain=DSM 18103",
                "accession": "GCA_000430545.1",
                "taxid": 104270,
                "species_taxid": 104270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6202,
                "matched_fragments": 425,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum todarodis",
                "strain": "strain=LPB0136",
                "accession": "GCA_001889045.1",
                "taxid": 1850252,
                "species_taxid": 1850252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5657,
                "matched_fragments": 412,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum aiptasiae",
                "strain": "strain=a4",
                "accession": "GCA_008806755.1",
                "taxid": 426481,
                "species_taxid": 426481,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4747,
                "matched_fragments": 426,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum aquimarinum",
                "strain": "strain=K20-16",
                "accession": "GCA_022478115.1",
                "taxid": 2910675,
                "species_taxid": 2910675,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4215,
                "matched_fragments": 408,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter septentrionalilitoris",
                "strain": "strain=ANORD1",
                "accession": "GCA_009832745.1",
                "taxid": 2494657,
                "species_taxid": 2494657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1205,
                "matched_fragments": 305,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter pectinis",
                "strain": "strain=L12M9",
                "accession": "GCA_014352875.1",
                "taxid": 2738844,
                "species_taxid": 2738844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0734,
                "matched_fragments": 379,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter dokdonensis",
                "strain": "strain=KCTC 12392",
                "accession": "GCA_024362345.1",
                "taxid": 326329,
                "species_taxid": 326329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.967,
                "matched_fragments": 288,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter porphyrae",
                "strain": "strain=LMG 26671",
                "accession": "GCA_020532745.1",
                "taxid": 1137780,
                "species_taxid": 1137780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.658,
                "matched_fragments": 326,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter tangerinus",
                "strain": "strain=WS2-14",
                "accession": "GCA_002201235.1",
                "taxid": 1920034,
                "species_taxid": 1920034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1816,
                "matched_fragments": 229,
                "total_fragments": 1059,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008124875.1",
                "gtdb_species": "s__Tenacibaculum adriaticum",
                "ani": 100.0,
                "matched_fragments": 1059,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004762155.1",
                "gtdb_species": "s__Tenacibaculum sp004762155",
                "ani": 79.5946,
                "matched_fragments": 510,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003610735.1",
                "gtdb_species": "s__Tenacibaculum lutimaris",
                "ani": 79.2478,
                "matched_fragments": 422,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.15",
                "min_intra_species_ani": "97.15",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014062345.1",
                "gtdb_species": "s__Tenacibaculum pelagium",
                "ani": 79.1007,
                "matched_fragments": 443,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003664185.1",
                "gtdb_species": "s__Tenacibaculum discolor",
                "ani": 79.0512,
                "matched_fragments": 439,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.93",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004363005.1",
                "gtdb_species": "s__Tenacibaculum caenipelagi",
                "ani": 79.0005,
                "matched_fragments": 419,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002120225.1",
                "gtdb_species": "s__Tenacibaculum holothuriorum",
                "ani": 78.9678,
                "matched_fragments": 426,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003387615.1",
                "gtdb_species": "s__Tenacibaculum gallaicum",
                "ani": 78.9474,
                "matched_fragments": 434,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003867015.1",
                "gtdb_species": "s__Tenacibaculum singaporense",
                "ani": 78.8597,
                "matched_fragments": 420,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.88",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003867075.1",
                "gtdb_species": "s__Tenacibaculum mesophilum",
                "ani": 78.7334,
                "matched_fragments": 415,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.18",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000430545.1",
                "gtdb_species": "s__Tenacibaculum ovolyticum",
                "ani": 78.6394,
                "matched_fragments": 423,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008806755.1",
                "gtdb_species": "s__Tenacibaculum aiptasiae",
                "ani": 78.4886,
                "matched_fragments": 424,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900105985.1",
                "gtdb_species": "s__Tenacibaculum sp900105985",
                "ani": 78.4553,
                "matched_fragments": 403,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004337695.1",
                "gtdb_species": "s__Tenacibaculum sp004337695",
                "ani": 78.0936,
                "matched_fragments": 411,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900105455.1",
                "gtdb_species": "s__Tenacibaculum sp900105455",
                "ani": 77.741,
                "matched_fragments": 283,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905480405.1",
                "gtdb_species": "s__Polaribacter sp905480405",
                "ani": 77.5156,
                "matched_fragments": 341,
                "total_fragments": 1059,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 22.0,
        "optimum_ph": 7.0,
        "genome_size": 3211939.0,
        "gc_content": 31.23,
        "coding_genes": 3101.055,
        "rRNA16S_genes": 6.5,
        "tRNA_genes": 63.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.062,
        "aerobic_respiration": 0.937,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Tenacibaculum",
        "adriaticum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}