{ "type": "genome", "identifier": "GCF_008153345.1", "organism": "Treponema phagedenis", "title": "Treponema phagedenis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Bern", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008153345.1", "bioproject": "PRJNA224116", "biosample": "SAMN12512735", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "162", "species_taxid": "162", "organism_name": "Treponema phagedenis", "infraspecific_name": "strain=B43.1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/30", "asm_name": "ASM815334v1", "asm_submitter": "University of Bern", "gbrs_paired_asm": "GCA_008153345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/153/345/GCF_008153345.1_ASM815334v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3372116", "genome_size_ungapped": "3372116", "gc_percent": "40.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008153345.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "2917", "protein_coding_gene_count": "2806", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-30", "dateModified": "2019-08-30", "datePublished": "2019-08-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Treponema phagedenis" ], "sample_taxid": [ "162" ], "sample_host_organism": [ "cattle" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.938 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3372116", "Number of Sequences": "1", "Longest Sequences (bp)": "3372116", "N50 (bp)": "3372116", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.9", "Number of CDSs": "2878", "Average Protein Length": "324.1", "Coding Ratio (%)": "83.0", "Number of rRNAs": "6", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Treponema phagedenis", "strain": "strain=B43.1", "accession": "GCA_008153345.1", "taxid": 162, "species_taxid": 162, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1118, "total_fragments": 1124, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": 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"spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Treponema", "phagedenis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }