{ "type": "genome", "identifier": "GCF_008195825.1", "organism": "Pedobacter aquae", "title": "Pedobacter aquae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008195825.1", "bioproject": "PRJNA224116", "biosample": "SAMN12623719", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2605747", "species_taxid": "2605747", "organism_name": "Pedobacter aquae", "infraspecific_name": "strain=CJ43", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/02", "asm_name": "ASM819582v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_008195825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/195/825/GCF_008195825.1_ASM819582v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3854044", "genome_size_ungapped": "3854044", "gc_percent": "35.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008195825.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3498", "protein_coding_gene_count": "3344", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-02", "dateModified": "2019-09-02", "datePublished": "2019-09-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pedobacter aquae" ], "sample_taxid": [ "2605747" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gangwon-do" ], "sample_host_location_id": [], "data_size": "1.067 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3854044", "Number of Sequences": "1", "Longest Sequences (bp)": "3854044", "N50 (bp)": "3854044", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.9", "Number of CDSs": "3474", "Average Protein Length": "329.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "9", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedobacter aquae", "strain": "strain=CJ43", "accession": "GCA_008195825.1", "taxid": 2605747, "species_taxid": 2605747, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1283, "total_fragments": 1284, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pedobacter puniceum", "strain": "strain=HX-22-1", "accession": "GCA_009674685.1", "taxid": 2666136, "species_taxid": 2666136, "relation_to_type": "type", "validated": true, "ani": 91.5038, "matched_fragments": 1028, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter glucosidilyticus", "strain": "strain=DSM 23534", "accession": "GCA_000425145.1", "taxid": 1122941, "species_taxid": 1122941, "relation_to_type": "type", "validated": true, "ani": 89.2743, "matched_fragments": 948, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryophilus", "strain": "strain=AR-3-17", "accession": "GCA_005116455.1", "taxid": 2571271, "species_taxid": 2571271, "relation_to_type": "type", "validated": true, "ani": 77.9498, "matched_fragments": 356, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudopedobacter saltans", "strain": "strain=DSM 12145", "accession": "GCA_000190735.2", "taxid": 151895, "species_taxid": 151895, "relation_to_type": "type", "validated": true, "ani": 77.8891, "matched_fragments": 193, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychrophilus", "strain": "strain=CCM 8644", "accession": "GCA_001652725.1", "taxid": 1826909, "species_taxid": 1826909, "relation_to_type": "type", "validated": true, "ani": 77.5172, "matched_fragments": 271, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter arcticus", "strain": "strain=A12", "accession": "GCA_000302595.1", "taxid": 752140, "species_taxid": 752140, "relation_to_type": "type", "validated": true, "ani": 77.4302, "matched_fragments": 219, "total_fragments": 1284, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobium manganitolerans", "strain": "strain=YS-25", "accession": "GCA_003609575.1", "taxid": 1842495, 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016623585.1", "gtdb_species": "s__Pelobium sp016623585", "ani": 76.8793, "matched_fragments": 235, "total_fragments": 1284, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pelobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.28, "cell_length": 0.284, "doubling_h": null, "growth_tmp": 24.703, "optimum_tmp": 25.616, "optimum_ph": 7.026, "genome_size": 5519163.389, "gc_content": 42.651, "coding_genes": 4725.333, "rRNA16S_genes": 4.333, "tRNA_genes": 57.25, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.281, "range_salinity": null, "facultative_respiration": 0.031, "anaerobic_respiration": 0.0, 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