{ "type": "genome", "identifier": "GCF_008271285.1", "organism": "Hymenobacter lutimineralis", "title": "Hymenobacter lutimineralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Incheon National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008271285.1", "bioproject": "PRJNA224116", "biosample": "SAMN12638699", "wgs_master": "VTHL00000000.1", "refseq_category": "reference genome", "taxid": "2606448", "species_taxid": "2606448", "organism_name": "Hymenobacter lutimineralis", "infraspecific_name": "strain=KIGAM108", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/03", "asm_name": "ASM827128v1", "asm_submitter": "Incheon National University", "gbrs_paired_asm": "GCA_008271285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/271/285/GCF_008271285.1_ASM827128v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4903367", "genome_size_ungapped": "4903079", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008271285.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4244", "protein_coding_gene_count": "4170", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-03", "dateModified": "2019-09-03", "datePublished": "2019-09-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter lutimineralis" ], "sample_taxid": [ "2606448" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyeongju-si" ], "sample_host_location_id": [], "data_size": "1.382 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4903367", "Number of Sequences": "53", "Longest Sequences (bp)": "561490", "N50 (bp)": "176081", "Gap Ratio (%)": "0.005874", "GCcontent (%)": "60.0", "Number of CDSs": "4225", "Average Protein Length": "336.4", "Coding Ratio (%)": "86.9", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 85.9318, "matched_fragments": 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"status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 81.2835, "matched_fragments": 891, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallilatus", "strain": "strain=9PBR-2", "accession": "GCA_003944705.1", "taxid": 2493666, "species_taxid": 2493666, "relation_to_type": "type", "validated": true, "ani": 81.208, "matched_fragments": 879, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter swuensis", "strain": "strain=DY53", "accession": "GCA_000576555.1", "taxid": 1446467, "species_taxid": 1446467, "relation_to_type": "type", "validated": true, "ani": 81.1255, "matched_fragments": 853, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter persicinus", "strain": "strain=1-3-3-3", "accession": "GCA_004167665.1", "taxid": 2025506, "species_taxid": 2025506, "relation_to_type": "type", "validated": true, "ani": 81.1108, "matched_fragments": 829, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter duratus", "strain": "strain=BT646", "accession": "GCA_014698995.1", "taxid": 2771356, "species_taxid": 2771356, "relation_to_type": "type", "validated": true, "ani": 80.7376, "matched_fragments": 785, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 1562124, "species_taxid": 1562124, "relation_to_type": "type", "validated": true, "ani": 80.7278, "matched_fragments": 810, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter chitinivorans", "strain": "strain=DSM 11115", "accession": "GCA_002797555.1", "taxid": 89969, "species_taxid": 89969, "relation_to_type": "type", "validated": true, "ani": 80.6423, "matched_fragments": 891, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 80.6156, "matched_fragments": 760, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 80.3984, "matched_fragments": 844, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", 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"relation_to_type": "type", "validated": true, "ani": 79.2046, "matched_fragments": 693, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012273015.1", "gtdb_species": "s__Hymenobacter sp012273015", "ani": 97.5365, "matched_fragments": 1429, "total_fragments": 1606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_015773195.1", "gtdb_species": "s__Hymenobacter sp015773195", "ani": 85.9166, "matched_fragments": 1242, "total_fragments": 1606, "gtdb_taxonomy": 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