{ "type": "genome", "identifier": "GCF_008274625.1", "organism": "Chryseobacterium panacisoli", "title": "Chryseobacterium panacisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankyong National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008274625.1", "bioproject": "PRJNA224116", "biosample": "SAMN12598862", "wgs_master": "VTRU00000000.1", "refseq_category": "reference genome", "taxid": "1807141", "species_taxid": "1807141", "organism_name": "Chryseobacterium panacisoli", "infraspecific_name": "strain=Gsoil 183", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/04", "asm_name": "ASM827462v1", "asm_submitter": "Hankyong National University", "gbrs_paired_asm": "GCA_008274625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/274/625/GCF_008274625.1_ASM827462v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4983760", "genome_size_ungapped": "4983760", "gc_percent": "36.500000", "replicon_count": "1", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008274625.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4500", "protein_coding_gene_count": "4406", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-04", "dateModified": "2019-09-04", "datePublished": "2019-09-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium panacisoli" ], "sample_taxid": [ "1807141" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Pocheon" ], "sample_host_location_id": [], "data_size": "1.393 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4983760", "Number of Sequences": "17", "Longest Sequences (bp)": "2346872", "N50 (bp)": "576644", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.4", "Number of CDSs": "4387", "Average Protein Length": "327.0", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "74", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium panacisoli", "strain": "strain=Gsoil 183", "accession": "GCA_008274625.1", "taxid": 1807141, "species_taxid": 1807141, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1650, "total_fragments": 1652, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 91.1437, "matched_fragments": 1422, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 90.784, "matched_fragments": 1394, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cucumeris", "strain": "strain=GSE06", "accession": "GCA_001593385.1", "taxid": 1813611, "species_taxid": 1813611, "relation_to_type": "type", "validated": true, "ani": 87.2033, "matched_fragments": 1332, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium viscerum", "strain": "strain=687B-08", "accession": "GCA_002899945.2", "taxid": 1037377, "species_taxid": 1037377, "relation_to_type": "type", "validated": true, "ani": 87.1057, "matched_fragments": 1357, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=ATCC 35910", "accession": "GCA_000143785.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 86.3961, "matched_fragments": 1257, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium culicis", "strain": "strain=DSM 23031", "accession": "GCA_900108365.1", "taxid": 680127, "species_taxid": 680127, "relation_to_type": "type", "validated": true, "ani": 85.9799, "matched_fragments": 1243, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium pennae", "strain": "strain=1_F178", "accession": "GCA_003385515.1", "taxid": 2258962, "species_taxid": 2258962, "relation_to_type": "type", "validated": true, "ani": 83.3725, "matched_fragments": 1083, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 83.3644, "matched_fragments": 1087, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.7078, "matched_fragments": 704, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.5801, "matched_fragments": 792, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.2494, "matched_fragments": 815, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.7668, "matched_fragments": 520, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.474, "matched_fragments": 627, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008274625.1", "gtdb_species": "s__Chryseobacterium sp008274625", "ani": 100.0, "matched_fragments": 1650, "total_fragments": 1652, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_903969135.1", "gtdb_species": "s__Chryseobacterium sp900156935", "ani": 92.9181, "matched_fragments": 1464, "total_fragments": 1652, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "99.11", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000799335.1", "gtdb_species": "s__Chryseobacterium sp000799335", "ani": 92.692, "matched_fragments": 1497, "total_fragments": 1652, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008386505.1", "gtdb_species": "s__Chryseobacterium sediminis", "ani": 91.1437, "matched_fragments": 1422, 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"gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.189, "cell_length": 0.179, "doubling_h": null, "growth_tmp": 28.072, "optimum_tmp": 27.875, "optimum_ph": 6.92, "genome_size": 4222577.78, "gc_content": 39.236, "coding_genes": 3717.633, "rRNA16S_genes": 4.75, "tRNA_genes": 64.066, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.018, "range_salinity": 0.5, "facultative_respiration": 0.025, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.975, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.981, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.018, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "panacisoli" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }