{ "type": "genome", "identifier": "GCF_008297975.1", "organism": "Antrihabitans cavernicola", "title": "Antrihabitans cavernicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BioPS Co., Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008297975.1", "bioproject": "PRJNA224116", "biosample": "SAMN12303457", "wgs_master": "VLNY00000000.1", "refseq_category": "reference genome", "taxid": "2495913", "species_taxid": "2495913", "organism_name": "Antrihabitans cavernicola", "infraspecific_name": "strain=C1-24", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/05", "asm_name": "ASM829797v1", "asm_submitter": "BioPS Co., Ltd.", "gbrs_paired_asm": "GCA_008297975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/297/975/GCF_008297975.1_ASM829797v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5660905", "genome_size_ungapped": "5660905", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008297975.1-RS_2024_08_25", "annotation_date": "2024-08-25", "total_gene_count": "5467", "protein_coding_gene_count": "5309", "non_coding_gene_count": "54", "pubmed_id": "32538737" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-05", "dateModified": "2019-09-05", "datePublished": "2019-09-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Antrihabitans cavernicola" ], "sample_taxid": [ "2495913" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju" ], "sample_host_location_id": [], "data_size": "1.567 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.14, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5660905", "Number of Sequences": "41", "Longest Sequences (bp)": "775989", "N50 (bp)": "419194", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "5390", "Average Protein Length": "318.6", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodococcus cavernicola", "strain": "strain=C1-24", "accession": "GCA_008297975.1", "taxid": 2495913, "species_taxid": 2495913, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1860, "total_fragments": 1864, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodococcus spelaei", "strain": "strain=C9-5", "accession": "GCA_006704125.1", "taxid": 2546320, "species_taxid": 2546320, "relation_to_type": "type", "validated": true, "ani": 78.6828, "matched_fragments": 541, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus tukisamuensis", "strain": "strain=JCM 11308", "accession": "GCA_900101735.1", "taxid": 168276, "species_taxid": 168276, "relation_to_type": "type", "validated": true, "ani": 78.6771, "matched_fragments": 561, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus oryzae", "strain": "strain=NEAU-CX67", "accession": "GCA_005049235.1", "taxid": 2571143, "species_taxid": 2571143, "relation_to_type": "type", "validated": true, "ani": 78.6434, "matched_fragments": 578, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus tukisamuensis", "strain": "strain=NBRC 100609", "accession": "GCA_001894985.1", "taxid": 168276, "species_taxid": 168276, "relation_to_type": "type", "validated": true, "ani": 78.6424, "matched_fragments": 560, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus maanshanensis", "strain": "strain=NBRC 100610", "accession": "GCA_001894865.1", "taxid": 183556, "species_taxid": 183556, "relation_to_type": "type", "validated": true, "ani": 78.641, "matched_fragments": 582, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus maanshanensis", "strain": "strain=DSM 44675", "accession": "GCA_900109405.1", "taxid": 183556, "species_taxid": 183556, "relation_to_type": "type", "validated": true, "ani": 78.5825, "matched_fragments": 589, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella defluvii", "strain": "strain=Ca11", "accession": "GCA_000738775.1", "taxid": 1323361, "species_taxid": 1323361, "relation_to_type": "type", "validated": true, "ani": 78.5445, "matched_fragments": 488, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus wratislaviensis", "strain": "strain=NCTC13229", "accession": "GCA_900455735.1", "taxid": 44752, "species_taxid": 44752, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3855, "matched_fragments": 577, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus jostii", "strain": "strain=NBRC 16295", "accession": "GCA_001894825.1", "taxid": 132919, "species_taxid": 132919, "relation_to_type": "type", "validated": true, "ani": 78.3622, "matched_fragments": 587, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus pseudokoreensis", "strain": "strain=R79", "accession": "GCA_017068395.1", "taxid": 2811421, "species_taxid": 2811421, "relation_to_type": "type", "validated": true, "ani": 78.3472, "matched_fragments": 594, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia farcinica", "strain": "strain=NCTC11134", "accession": "GCA_001182745.2", "taxid": 37329, "species_taxid": 37329, "relation_to_type": "type", "validated": true, "ani": 78.3366, "matched_fragments": 561, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus fascians", "strain": "strain=LMG 3623", "accession": "GCA_000761055.1", "taxid": 1828, "species_taxid": 1828, "relation_to_type": "type", "validated": true, "ani": 78.3364, "matched_fragments": 405, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus fascians", "strain": "strain=NBRC 12155", "accession": "GCA_001894785.1", "taxid": 1828, "species_taxid": 1828, 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"matched_fragments": 502, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus oxybenzonivorans", "strain": "strain=S2-17", "accession": "GCA_003130705.1", "taxid": 1990687, "species_taxid": 1990687, "relation_to_type": "type", "validated": true, "ani": 78.1539, "matched_fragments": 444, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia brasiliensis", "strain": "strain=NBRC 14402", "accession": "GCA_000308475.2", "taxid": 37326, "species_taxid": 37326, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0904, "matched_fragments": 590, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia brasiliensis", "strain": "strain=NCTC11294", "accession": "GCA_900454265.1", "taxid": 37326, "species_taxid": 37326, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0784, "matched_fragments": 596, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia albiluteola", "strain": "strain=NEAU-G5", "accession": "GCA_018860155.1", "taxid": 2842303, "species_taxid": 2842303, "relation_to_type": "type", "validated": true, "ani": 77.8339, "matched_fragments": 492, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia crassostreae", "strain": "strain=NBRC 100342", "accession": "GCA_001613405.1", "taxid": 53428, "species_taxid": 53428, "relation_to_type": "type", "validated": true, "ani": 77.7069, "matched_fragments": 427, "total_fragments": 1864, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.14, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_008297975.1", "gtdb_species": "s__C1-24 sp008297975", "ani": 100.0, "matched_fragments": 1860, "total_fragments": 1864, "gtdb_taxonomy": 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