{ "type": "genome", "identifier": "GCF_008329645.1", "organism": "Mycolicibacterium grossiae", "title": "Mycolicibacterium grossiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tongde Hospital of Zhejiang Province", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008329645.1", "bioproject": "PRJNA224116", "biosample": "SAMN12660232", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1552759", "species_taxid": "1552759", "organism_name": "Mycolicibacterium grossiae", "infraspecific_name": "strain=DSM 104744", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/08", "asm_name": "ASM832964v1", "asm_submitter": "Tongde Hospital of Zhejiang Province", "gbrs_paired_asm": "GCA_008329645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/329/645/GCF_008329645.1_ASM832964v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5681602", "genome_size_ungapped": "5681602", "gc_percent": "70.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008329645.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5474", "protein_coding_gene_count": "5357", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-08", "dateModified": "2019-09-08", "datePublished": "2019-09-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium grossiae" ], "sample_taxid": [ "1552759" ], "sample_host_organism": [ "none" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "none" ], "sample_host_location_id": [], "data_size": "1.512 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5681602", "Number of Sequences": "2", "Longest Sequences (bp)": "5637923", "N50 (bp)": "5637923", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.5", "Number of CDSs": "5484", "Average Protein Length": "320.5", "Coding Ratio (%)": "92.8", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium arabiense", "strain": "strain=JCM 18538", "accession": "GCA_010731815.2", "taxid": 1286181, "species_taxid": 1286181, 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"validated": true, "ani": 81.5323, "matched_fragments": 1036, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_001583415.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 81.4657, "matched_fragments": 1062, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 81.3419, "matched_fragments": 1093, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chubuense", "strain": "strain=DSM 44219", "accession": "GCA_001044255.1", "taxid": 1800, "species_taxid": 1800, "relation_to_type": "type", "validated": true, "ani": 81.2008, "matched_fragments": 1084, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium litorale", "strain": "strain=JCM 17423", "accession": "GCA_010731695.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 81.1675, "matched_fragments": 1099, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chubuense", "strain": "strain=DSM 44219", "accession": "GCA_002086595.1", "taxid": 1800, "species_taxid": 1800, "relation_to_type": "type", "validated": true, "ani": 81.1599, "matched_fragments": 1102, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chlorophenolicum", "strain": "strain=DSM 43826", "accession": "GCA_001044235.1", "taxid": 37916, "species_taxid": 37916, "relation_to_type": "type", "validated": true, "ani": 81.1509, "matched_fragments": 1143, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium litorale", "strain": "strain=CGMCC 4.5724", "accession": "GCA_004366555.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 81.089, "matched_fragments": 1107, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chubuense", "strain": "strain=NCTC10819", "accession": "GCA_900453455.1", "taxid": 1800, "species_taxid": 1800, "relation_to_type": "type", "validated": true, "ani": 81.0659, "matched_fragments": 1130, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chlorophenolicum", "strain": "strain=NBRC 15527", "accession": "GCA_001552315.1", "taxid": 37916, "species_taxid": 37916, "relation_to_type": "type", "validated": true, "ani": 81.0557, "matched_fragments": 1148, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium psychrotolerans", "strain": "strain=JCM 13323", "accession": "GCA_010729305.1", "taxid": 216929, "species_taxid": 216929, "relation_to_type": "type", "validated": true, "ani": 81.0439, "matched_fragments": 1045, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_000613185.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 80.8118, "matched_fragments": 1071, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_005670675.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 80.7492, "matched_fragments": 1062, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phocaicum", "strain": "strain=JCM 15301", "accession": "GCA_010731115.1", "taxid": 319706, "species_taxid": 319706, "relation_to_type": "type", "validated": true, "ani": 80.4994, "matched_fragments": 884, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 80.2595, "matched_fragments": 868, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aurum", "strain": "strain=NCTC10437", "accession": "GCA_900637195.1", "taxid": 1791, "species_taxid": 1791, "relation_to_type": "type", "validated": true, "ani": 80.1548, "matched_fragments": 1015, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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