{ "type": "genome", "identifier": "GCF_008364245.1", "organism": "Serratia nevei", "title": "Serratia nevei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max Rubner-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008364245.1", "bioproject": "PRJNA224116", "biosample": "SAMN12560218", "wgs_master": "VTUS00000000.1", "refseq_category": "na", "taxid": "2703794", "species_taxid": "2703794", "organism_name": "Serratia nevei", "infraspecific_name": "strain=S15", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/09", "asm_name": "ASM836424v1", "asm_submitter": "Max Rubner-Institut", "gbrs_paired_asm": "GCA_008364245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/364/245/GCF_008364245.1_ASM836424v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5421591", "genome_size_ungapped": "5421591", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008364245.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "5212", "protein_coding_gene_count": "5064", "non_coding_gene_count": "108", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-09", "dateModified": "2019-09-09", "datePublished": "2019-09-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia nevei" ], "sample_taxid": [ "2703794" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.517 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5421591", "Number of Sequences": "40", "Longest Sequences (bp)": "1059746", "N50 (bp)": "512022", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "5077", "Average Protein Length": "310.4", "Coding Ratio (%)": "87.2", "Number of rRNAs": "2", "Number of tRNAs": "86", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1789, "total_fragments": 1789, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880", "accession": "GCA_017654245.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", "validated": true, "ani": 95.1252, "matched_fragments": 1496, "total_fragments": 1789, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 95.1187, "matched_fragments": 1502, "total_fragments": 1789, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880 substr. 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