{ "type": "genome", "identifier": "GCF_008365385.1", "organism": "Halopseudomonas laoshanensis", "title": "Halopseudomonas laoshanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Peanut Reaearch Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008365385.1", "bioproject": "PRJNA224116", "biosample": "SAMN09652584", "wgs_master": "QOVF00000000.1", "refseq_category": "reference genome", "taxid": "2268758", "species_taxid": "2268758", "organism_name": "Halopseudomonas laoshanensis", "infraspecific_name": "strain=Y22", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/10", "asm_name": "ASM836538v1", "asm_submitter": "Shandong Peanut Reaearch Institute", "gbrs_paired_asm": "GCA_008365385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/365/385/GCF_008365385.1_ASM836538v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4106373", "genome_size_ungapped": "4106373", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008365385.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3790", "protein_coding_gene_count": "3708", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-10", "dateModified": "2019-09-10", "datePublished": "2019-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopseudomonas laoshanensis" ], "sample_taxid": [ "2268758" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qingdao" ], "sample_host_location_id": [], "data_size": "1.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4106373", "Number of Sequences": "16", "Longest Sequences (bp)": "1439279", "N50 (bp)": "930914", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.8", "Number of CDSs": "3774", "Average Protein Length": "329.2", "Coding Ratio (%)": "90.8", "Number of rRNAs": "5", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas salina", "strain": "strain=XCD-X85", "accession": "GCA_008641105.1", "taxid": 1323744, "species_taxid": 1323744, "relation_to_type": "type", "validated": true, "ani": 79.611, "matched_fragments": 519, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas salina", "strain": "strain=CGMCC 1.12482", "accession": "GCA_014637955.1", "taxid": 1323744, "species_taxid": 1323744, "relation_to_type": "type", "validated": true, "ani": 79.5961, "matched_fragments": 522, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas litoralis", "strain": "strain=2SM5", "accession": "GCA_900105005.1", "taxid": 797277, "species_taxid": 797277, "relation_to_type": "type", "validated": true, "ani": 79.2365, "matched_fragments": 397, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=DSM 22558", "accession": "GCA_900111225.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, 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"below_threshold" }, { "organism_name": "Stutzerimonas chloritidismutans", "strain": "strain=AW-1", "accession": "GCA_000495915.1", "taxid": 203192, "species_taxid": 203192, "relation_to_type": "type", "validated": true, "ani": 77.3929, "matched_fragments": 258, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=CFBP 1702", "accession": "GCA_000935765.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 77.3885, "matched_fragments": 214, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_900114065.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 77.2962, "matched_fragments": 268, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { 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