{ "type": "genome", "identifier": "GCF_008367235.1", "organism": "Pareuzebyella sediminis", "title": "Pareuzebyella sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, SOA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008367235.1", "bioproject": "PRJNA224116", "biosample": "SAMN12669200", "wgs_master": "VTZS00000000.1", "refseq_category": "reference genome", "taxid": "2607998", "species_taxid": "2607998", "organism_name": "Pareuzebyella sediminis", "infraspecific_name": "strain=S2-4-21", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/10", "asm_name": "ASM836723v1", "asm_submitter": "Third Institute of Oceanography, SOA", "gbrs_paired_asm": "GCA_008367235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/367/235/GCF_008367235.1_ASM836723v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4907048", "genome_size_ungapped": "4907048", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008367235.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4108", "protein_coding_gene_count": "4053", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-10", "dateModified": "2019-09-10", "datePublished": "2019-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pareuzebyella sediminis" ], "sample_taxid": [ "2607998" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Quanzhou, Fujian" ], "sample_host_location_id": [], "data_size": "1.397 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4907048", "Number of Sequences": "20", "Longest Sequences (bp)": "1574046", "N50 (bp)": "982853", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.5", "Number of CDSs": "4016", "Average Protein Length": "358.8", "Coding Ratio (%)": "88.1", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pareuzebyella sediminis", "strain": "strain=S2-4-21", "accession": "GCA_008367235.1", "taxid": 2607998, "species_taxid": 2607998, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1622, "total_fragments": 1623, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Maribacter cobaltidurans", "strain": "strain=B1", "accession": "GCA_002269385.1", "taxid": 1178778, "species_taxid": 1178778, "relation_to_type": "type", "validated": true, "ani": 77.761, "matched_fragments": 149, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter cobaltidurans", "strain": "strain=CGMCC 1.15508", "accession": "GCA_014643435.1", "taxid": 1178778, "species_taxid": 1178778, "relation_to_type": "type", "validated": true, "ani": 77.6782, "matched_fragments": 149, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Euzebyella marina", "strain": "strain=CY01", "accession": "GCA_014855515.1", "taxid": 1761453, "species_taxid": 1761453, "relation_to_type": "type", "validated": true, "ani": 77.4821, "matched_fragments": 213, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Euzebyella saccharophila", "strain": "strain=7SM30", "accession": "GCA_014855495.1", "taxid": 679664, "species_taxid": 679664, "relation_to_type": "type", "validated": true, "ani": 77.3384, "matched_fragments": 177, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda ruestringensis", "strain": "strain=DSM 13258", "accession": "GCA_000224085.1", "taxid": 111501, "species_taxid": 111501, "relation_to_type": "type", "validated": true, "ani": 77.0559, "matched_fragments": 87, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia galactanivorans", "strain": "strain=DsiJT", "accession": "GCA_000973105.1", "taxid": 63186, "species_taxid": 63186, "relation_to_type": "type", "validated": true, "ani": 76.9654, "matched_fragments": 198, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia russellii", "strain": "strain=KMM 3677", "accession": "GCA_018728565.1", "taxid": 248907, "species_taxid": 248907, "relation_to_type": "type", "validated": true, "ani": 76.9414, "matched_fragments": 183, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia uliginosa", "strain": "strain=DSM 2061", "accession": "GCA_900156625.1", "taxid": 143224, "species_taxid": 143224, "relation_to_type": "type", "validated": true, "ani": 76.9308, "matched_fragments": 226, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda pacifica", "strain": "strain=DSM 25027", "accession": "GCA_003001695.1", "taxid": 1080225, "species_taxid": 1080225, "relation_to_type": "type", "validated": true, "ani": 76.8343, "matched_fragments": 74, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia nedashkovskayae", "strain": "strain=Asnod2-B07-B", "accession": "GCA_015330125.1", "taxid": 2779510, "species_taxid": 2779510, "relation_to_type": "type", "validated": true, "ani": 76.8147, "matched_fragments": 162, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pricia antarctica", "strain": "strain=DSM 23421", "accession": "GCA_900101815.1", "taxid": 641691, "species_taxid": 641691, "relation_to_type": "type", "validated": true, "ani": 76.7089, "matched_fragments": 157, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter litoralis", "strain": "strain=SDRB-Phe2", "accession": "GCA_003075045.1", "taxid": 2059726, "species_taxid": 2059726, "relation_to_type": "type", "validated": true, "ani": 76.6924, "matched_fragments": 116, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda profundi", "strain": "strain=BC31-3-A3", "accession": "GCA_017313275.1", "taxid": 2915620, "species_taxid": 2915620, "relation_to_type": "type", "validated": true, "ani": 76.594, "matched_fragments": 88, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter ulvicola", "strain": "strain=DSM 15366", "accession": "GCA_900155985.1", "taxid": 228959, "species_taxid": 228959, "relation_to_type": "type", "validated": true, "ani": 76.5481, "matched_fragments": 110, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amphidinii", "strain": "strain=LMIT004", "accession": "GCA_013090115.1", "taxid": 2735167, "species_taxid": 2735167, "relation_to_type": "type", "validated": true, "ani": 76.5214, "matched_fragments": 81, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter vaceletii", "strain": "strain=DSM 25230", "accession": "GCA_003634105.1", "taxid": 1206816, "species_taxid": 1206816, "relation_to_type": "type", "validated": true, "ani": 76.4833, "matched_fragments": 81, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagihabitans pacificus", "strain": "strain=TP-CH-4", "accession": "GCA_009371985.2", "taxid": 2696054, "species_taxid": 2696054, "relation_to_type": "type", "validated": true, "ani": 76.4389, "matched_fragments": 116, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda hymeniacidonis", "strain": "strain=176CP4-71", "accession": "GCA_004296335.1", "taxid": 2517819, "species_taxid": 2517819, "relation_to_type": "type", "validated": true, "ani": 76.409, "matched_fragments": 66, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aurantiaca", "strain": "strain=HME9304", "accession": "GCA_003269425.1", "taxid": 1383885, "species_taxid": 1383885, "relation_to_type": "type", "validated": true, "ani": 76.2449, "matched_fragments": 76, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda flava", "strain": "strain=DSM 22638", "accession": "GCA_900129665.1", "taxid": 570519, "species_taxid": 570519, "relation_to_type": "type", "validated": true, "ani": 75.9672, "matched_fragments": 70, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter palladensis", "strain": "strain=DSM 17539", "accession": "GCA_900129275.1", "taxid": 237373, "species_taxid": 237373, "relation_to_type": "type", "validated": true, "ani": 75.8239, "matched_fragments": 126, "total_fragments": 1623, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008367235.1", "gtdb_species": "s__Pareuzebyella sediminis", "ani": 100.0, "matched_fragments": 1622, "total_fragments": 1623, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pareuzebyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002269385.1", "gtdb_species": "s__Maribacter cobaltidurans", "ani": 77.7667, "matched_fragments": 148, "total_fragments": 1623, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014349235.1", "gtdb_species": "s__Euzebyella sp014349235", "ani": 77.567, "matched_fragments": 171, "total_fragments": 1623, "gtdb_taxonomy": 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