{ "type": "genome", "identifier": "GCF_008368715.1", "organism": "Nitrincola tapanii", "title": "Nitrincola tapanii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Centre for Cell Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008368715.1", "bioproject": "PRJNA224116", "biosample": "SAMN11081988", "wgs_master": "SMRS00000000.1", "refseq_category": "reference genome", "taxid": "1708751", "species_taxid": "1708751", "organism_name": "Nitrincola tapanii", "infraspecific_name": "strain=MEB193", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/10", "asm_name": "ASM836871v1", "asm_submitter": "National Centre for Cell Science", "gbrs_paired_asm": "GCA_008368715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/368/715/GCF_008368715.1_ASM836871v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2793747", "genome_size_ungapped": "2793747", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008368715.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2624", "protein_coding_gene_count": "2548", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-10", "dateModified": "2019-09-10", "datePublished": "2019-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nitrincola tapanii" ], "sample_taxid": [ "1708751" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Lonar lake, Buldhana district, Maharashtra" ], "sample_host_location_id": [], "data_size": "0.799 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2793747", "Number of Sequences": "19", "Longest Sequences (bp)": "547768", "N50 (bp)": "282347", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.8", "Number of CDSs": "2567", "Average Protein Length": "332.4", "Coding Ratio (%)": "91.6", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nitrincola tapanii", "strain": "strain=MEB193", "accession": "GCA_008368715.1", "taxid": 1708751, "species_taxid": 1708751, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 921, "total_fragments": 921, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nitrincola schmidtii", "strain": "strain=NCAIM B.02626", "accession": "GCA_008973715.1", "taxid": 1730894, "species_taxid": 1730894, "relation_to_type": "type", "validated": true, "ani": 78.4159, "matched_fragments": 144, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrincola tibetensis", "strain": "strain=xg18", "accession": "GCA_003284585.1", "taxid": 2219697, "species_taxid": 2219697, "relation_to_type": "type", "validated": true, "ani": 78.3985, "matched_fragments": 121, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrincola lacisaponensis", "strain": "strain=4CA", "accession": "GCA_000691225.1", "taxid": 267850, "species_taxid": 267850, "relation_to_type": "type", "validated": true, "ani": 78.2587, "matched_fragments": 171, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neptunomonas concharum", "strain": "strain=JCM 17730", "accession": "GCA_006148955.1", "taxid": 1031538, "species_taxid": 1031538, "relation_to_type": "type", "validated": true, "ani": 78.1842, "matched_fragments": 60, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium georgiense", "strain": "strain=DSM 11526", "accession": "GCA_900107855.1", "taxid": 48076, "species_taxid": 48076, "relation_to_type": "type", "validated": true, "ani": 78.1068, "matched_fragments": 96, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neptunomonas concharum", "strain": "strain=JCM17730", "accession": "GCA_008630635.1", "taxid": 1031538, "species_taxid": 1031538, "relation_to_type": "type", "validated": true, "ani": 78.023, "matched_fragments": 61, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrincola iocasae", "strain": "strain=KXZD1103", "accession": "GCA_008727795.1", "taxid": 2614693, "species_taxid": 2614693, "relation_to_type": "type", "validated": true, "ani": 77.7997, "matched_fragments": 184, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium stanieri", "strain": "strain=DSM 7027", "accession": "GCA_900155945.1", "taxid": 49186, "species_taxid": 49186, "relation_to_type": "type", "validated": true, "ani": 77.7707, "matched_fragments": 96, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium lutimaris", "strain": "strain=DSM 22012", "accession": "GCA_900108065.1", "taxid": 568106, "species_taxid": 568106, "relation_to_type": "type", "validated": true, "ani": 77.7561, "matched_fragments": 95, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium halophilum", "strain": "strain=DSM 17586", "accession": "GCA_003014615.1", 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