{ "type": "genome", "identifier": "GCF_008369105.1", "organism": "Aquicoccus porphyridii", "title": "Aquicoccus porphyridii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008369105.1", "bioproject": "PRJNA224116", "biosample": "SAMN12179512", "wgs_master": "VINQ00000000.1", "refseq_category": "reference genome", "taxid": "1852029", "species_taxid": "1852029", "organism_name": "Aquicoccus porphyridii", "infraspecific_name": "strain=L1 8-17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/10", "asm_name": "ASM836910v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_008369105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/369/105/GCF_008369105.1_ASM836910v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4513837", "genome_size_ungapped": "4513837", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "256", "contig_count": "256", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008369105.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "4560", "protein_coding_gene_count": "4379", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-10", "dateModified": "2019-09-10", "datePublished": "2019-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquicoccus porphyridii" ], "sample_taxid": [ "1852029" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.257 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4513837", "Number of Sequences": "256", "Longest Sequences (bp)": "639696", "N50 (bp)": "179538", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "4302", "Average Protein Length": "304.9", "Coding Ratio (%)": "87.2", "Number of rRNAs": "4", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 79.9974, "matched_fragments": 591, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 79.9572, "matched_fragments": 586, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nitratireducens", "strain": "strain=TFZ", "accession": "GCA_002925845.1", "taxid": 2044597, "species_taxid": 2044597, "relation_to_type": "type", "validated": true, "ani": 79.2488, "matched_fragments": 510, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 79.1091, "matched_fragments": 482, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"accession": "GCA_000152625.1", "taxid": 314263, "species_taxid": 314263, "relation_to_type": "type", "validated": true, "ani": 78.8861, "matched_fragments": 467, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius confluentis", "strain": "strain=SAG6", "accession": "GCA_002917925.1", "taxid": 1852027, "species_taxid": 1852027, "relation_to_type": "type", "validated": true, "ani": 78.8664, "matched_fragments": 461, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 78.8381, "matched_fragments": 518, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.8218, "matched_fragments": 530, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 78.6799, "matched_fragments": 531, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 78.4884, "matched_fragments": 484, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salibaculum halophilum", "strain": "strain=WDS1C4", "accession": "GCA_002094885.1", "taxid": 1914408, "species_taxid": 1914408, "relation_to_type": "type", "validated": true, "ani": 78.4489, "matched_fragments": 354, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius faecimaris", "strain": "strain=MME-070", "accession": "GCA_009762325.1", "taxid": 2494550, "species_taxid": 2494550, "relation_to_type": "type", "validated": true, "ani": 78.3506, "matched_fragments": 448, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius aestuariivivens", "strain": "strain=GHTF-24", "accession": "GCA_004761875.1", "taxid": 1888910, "species_taxid": 1888910, "relation_to_type": "type", "validated": true, "ani": 78.3343, "matched_fragments": 347, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius bejariae", "strain": "strain=A21", "accession": "GCA_009669325.1", "taxid": 2576383, "species_taxid": 2576383, "relation_to_type": "type", "validated": true, "ani": 78.271, "matched_fragments": 427, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=CGMCC 1.12377", "accession": "GCA_014637265.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 78.2288, "matched_fragments": 448, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=DSM 29619", "accession": "GCA_900112545.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 78.1914, "matched_fragments": 403, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudopuniceibacterium sediminis", "strain": "strain=CY03", "accession": "GCA_003575965.1", "taxid": 2211117, "species_taxid": 2211117, "relation_to_type": "type", "validated": true, "ani": 78.1648, "matched_fragments": 358, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=CGMCC 1.7292", "accession": "GCA_900109195.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 78.1538, "matched_fragments": 402, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 78.1429, "matched_fragments": 426, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola hongkongensis", "strain": "strain=UST950701-009P", "accession": "GCA_000365005.1", "taxid": 278132, "species_taxid": 278132, "relation_to_type": "type", "validated": true, "ani": 78.1238, "matched_fragments": 385, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 78.0203, "matched_fragments": 397, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.9659, "matched_fragments": 346, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalilacustris brevis", "strain": "strain=34079", "accession": "GCA_003350345.1", "taxid": 2026338, "species_taxid": 2026338, "relation_to_type": "type", "validated": true, "ani": 77.9311, "matched_fragments": 327, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax 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"GCA_000743715.1", "taxid": 1530186, "species_taxid": 1530186, "relation_to_type": "type", "validated": true, "ani": 77.2327, "matched_fragments": 259, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 75.4272, "matched_fragments": 57, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 75.3954, "matched_fragments": 73, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, 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