{ "type": "genome", "identifier": "GCF_008369785.1", "organism": "Francisella marina", "title": "Francisella marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of California-Davis", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008369785.1", "bioproject": "PRJNA224116", "biosample": "SAMN12675351", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2249302", "species_taxid": "2249302", "organism_name": "Francisella marina", "infraspecific_name": "strain=E95-16", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/11", "asm_name": "ASM836978v1", "asm_submitter": "University of California-Davis", "gbrs_paired_asm": "GCA_008369785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/369/785/GCF_008369785.1_ASM836978v1", "excluded_from_refseq": "na", 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"sample_host_location": [ "Costa Rica:Puntarenas" ], "sample_host_location_id": [], "data_size": "0.573 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2062281", "Number of Sequences": "2", "Longest Sequences (bp)": "2058175", "N50 (bp)": "2058175", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.9", "Number of CDSs": "1983", "Average Protein Length": "319.4", "Coding Ratio (%)": "92.1", "Number of rRNAs": "10", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Francisella salina", "strain": "strain=TX07-7308", "accession": "GCA_000219045.1", "taxid": 573569, "species_taxid": 573569, "relation_to_type": "type", "validated": true, "ani": 97.7757, "matched_fragments": 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"min_intra_species_af": "0.89", "num_clustered_genomes": 860, "status": "-" }, { "accession": "GCF_000764555.1", "gtdb_species": "s__Francisella sp000764555", "ani": 80.7419, "matched_fragments": 312, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002211785.1", "gtdb_species": "s__Francisella halioticida", "ani": 79.329, "matched_fragments": 297, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": 0.477, "growth_tmp": 32.25, "optimum_tmp": 36.75, "optimum_ph": 6.3, "genome_size": 1911217.518, "gc_content": 31.517, "coding_genes": 1693.959, "rRNA16S_genes": 2.892, "tRNA_genes": 38.419, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.5, "coccus_cell_shape": 0.5, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Francisella", "marina" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }