{
    "type": "genome",
    "identifier": "GCF_008369935.1",
    "organism": "Paraburkholderia panacisoli",
    "title": "Paraburkholderia panacisoli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyung Hee University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008369935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12568966",
        "wgs_master": "VTUZ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2603818",
        "species_taxid": "2603818",
        "organism_name": "Paraburkholderia panacisoli",
        "infraspecific_name": "strain=DCY113",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/10",
        "asm_name": "ASM836993v1",
        "asm_submitter": "Kyung Hee University",
        "gbrs_paired_asm": "GCA_008369935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/369/935/GCF_008369935.1_ASM836993v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "10914015",
        "genome_size_ungapped": "10913961",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "158",
        "contig_count": "158",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008369935.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "10185",
        "protein_coding_gene_count": "9550",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-10",
    "dateModified": "2019-09-10",
    "datePublished": "2019-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraburkholderia panacisoli"
        ],
        "sample_taxid": [
            "2603818"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Gochang-gun"
        ],
        "sample_host_location_id": [],
        "data_size": "3.053 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "10914015",
        "Number of Sequences": "158",
        "Longest Sequences (bp)": "550924",
        "N50 (bp)": "195959",
        "Gap Ratio (%)": "0.000495",
        "GCcontent (%)": "62.2",
        "Number of CDSs": "9973",
        "Average Protein Length": "293.5",
        "Coding Ratio (%)": "80.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paraburkholderia panacisoli",
                "strain": "strain=DCY113",
                "accession": "GCA_008369935.1",
                "taxid": 2603818,
                "species_taxid": 2603818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3560,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paraburkholderia ultramafica",
                "strain": "strain=LMG 28614",
                "accession": "GCA_902859915.1",
                "taxid": 1544867,
                "species_taxid": 1544867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3993,
                "matched_fragments": 1826,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia ginsengisoli",
                "strain": "strain=NBRC 100965",
                "accession": "GCA_000739735.1",
                "taxid": 311231,
                "species_taxid": 311231,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3083,
                "matched_fragments": 1706,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia fynbosensis",
                "strain": "strain=LMG 27177",
                "accession": "GCA_902859935.1",
                "taxid": 1200993,
                "species_taxid": 1200993,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3731,
                "matched_fragments": 1848,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia ribeironis",
                "strain": "strain=STM 7296",
                "accession": "GCA_900019265.2",
                "taxid": 1247936,
                "species_taxid": 1247936,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9554,
                "matched_fragments": 1618,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia xenovorans",
                "strain": "strain=LB400",
                "accession": "GCA_000756045.1",
                "taxid": 36873,
                "species_taxid": 36873,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9963,
                "matched_fragments": 1668,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia xenovorans",
                "strain": "strain=LB400",
                "accession": "GCA_000013645.1",
                "taxid": 36873,
                "species_taxid": 36873,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.946,
                "matched_fragments": 1656,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia aromaticivorans",
                "strain": "strain=BN5",
                "accession": "GCA_002278075.1",
                "taxid": 2026199,
                "species_taxid": 2026199,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7547,
                "matched_fragments": 1771,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia nemoris",
                "strain": "strain=LMG 31836",
                "accession": "GCA_905221015.1",
                "taxid": 2793076,
                "species_taxid": 2793076,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9976,
                "matched_fragments": 1804,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia haematera",
                "strain": "strain=LMG 31837",
                "accession": "GCA_905220975.1",
                "taxid": 2793077,
                "species_taxid": 2793077,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9742,
                "matched_fragments": 1678,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia domus",
                "strain": "strain=LMG 31832",
                "accession": "GCA_905220705.1",
                "taxid": 2793075,
                "species_taxid": 2793075,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6919,
                "matched_fragments": 1723,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia podalyriae",
                "strain": "strain=WC7.3b",
                "accession": "GCA_014397785.1",
                "taxid": 1938811,
                "species_taxid": 1938811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2908,
                "matched_fragments": 1736,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia kirstenboschensis",
                "strain": "strain=KB15",
                "accession": "GCA_001636975.1",
                "taxid": 1245436,
                "species_taxid": 1245436,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.394,
                "matched_fragments": 1360,
                "total_fragments": 3565,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008369935.1",
                "gtdb_species": "s__Paraburkholderia panacisoli",
                "ani": 100.0,
                "matched_fragments": 3560,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_902859915.1",
                "gtdb_species": "s__Paraburkholderia ultramafica",
                "ani": 89.4275,
                "matched_fragments": 1822,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000739735.1",
                "gtdb_species": "s__Paraburkholderia ginsengisoli",
                "ani": 89.3171,
                "matched_fragments": 1705,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_012275575.1",
                "gtdb_species": "s__Paraburkholderia sp012275575",
                "ani": 88.5873,
                "matched_fragments": 1641,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902859935.1",
                "gtdb_species": "s__Paraburkholderia fynbosensis",
                "ani": 88.3881,
                "matched_fragments": 1846,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.83",
                "min_intra_species_ani": "96.83",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900019265.1",
                "gtdb_species": "s__Paraburkholderia ribeironis",
                "ani": 87.9641,
                "matched_fragments": 1616,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004339745.1",
                "gtdb_species": "s__Paraburkholderia sp004339745",
                "ani": 87.0777,
                "matched_fragments": 2011,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000013645.1",
                "gtdb_species": "s__Paraburkholderia xenovorans",
                "ani": 86.9563,
                "matched_fragments": 1655,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002278075.1",
                "gtdb_species": "s__Paraburkholderia aromaticivorans",
                "ani": 86.7437,
                "matched_fragments": 1772,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003002025.1",
                "gtdb_species": "s__Paraburkholderia sp003002025",
                "ani": 86.6523,
                "matched_fragments": 1739,
                "total_fragments": 3565,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.08",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.206,
        "cell_length": 0.138,
        "doubling_h": 0.0,
        "growth_tmp": 29.45,
        "optimum_tmp": 29.643,
        "optimum_ph": 6.11,
        "genome_size": 7672919.331,
        "gc_content": 62.985,
        "coding_genes": 7196.441,
        "rRNA16S_genes": 5.571,
        "tRNA_genes": 61.73,
        "gram_stain": 0.0,
        "sporulation": 0.035,
        "motility": 0.689,
        "range_salinity": 0.5,
        "facultative_respiration": 0.029,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.97,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.945,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.054,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paraburkholderia",
        "panacisoli"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}