{ "type": "genome", "identifier": "GCF_008370345.1", "organism": "Marinobacter salinexigens", "title": "Marinobacter salinexigens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008370345.1", "bioproject": "PRJNA224116", "biosample": "SAMN12587485", "wgs_master": "VTUU00000000.1", "refseq_category": "reference genome", "taxid": "2919747", "species_taxid": "2919747", "organism_name": "Marinobacter salinexigens", "infraspecific_name": "strain=ZYF650", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/11", "asm_name": "ASM837034v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_008370345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/370/345/GCF_008370345.1_ASM837034v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4240922", "genome_size_ungapped": "4240922", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "149", "contig_count": "149", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008370345.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "3841", "protein_coding_gene_count": "3758", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-11", "dateModified": "2019-09-11", "datePublished": "2019-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter salinexigens" ], "sample_taxid": [ "2919747" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Mariana trench" ], "sample_host_location_id": [], "data_size": "1.212 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4240922", "Number of Sequences": "149", "Longest Sequences (bp)": "972955", "N50 (bp)": "527644", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.6", "Number of CDSs": "3817", "Average Protein Length": "332.1", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter salinexigens", "strain": "strain=ZYF650", "accession": "GCA_008370345.1", "taxid": 2919747, "species_taxid": 2919747, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.9807, "matched_fragments": 521, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 79.8738, "matched_fragments": 517, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 79.5634, "matched_fragments": 458, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter santoriniensis", "strain": "strain=NKSG1", "accession": "GCA_000347775.1", "taxid": 523742, "species_taxid": 523742, "relation_to_type": "type", "validated": true, "ani": 79.557, "matched_fragments": 465, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 79.547, "matched_fragments": 527, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 79.5284, "matched_fragments": 561, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 79.426, "matched_fragments": 476, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter alexandrii", "strain": "strain=LZ-8", "accession": "GCA_005871205.1", "taxid": 2570351, "species_taxid": 2570351, "relation_to_type": "type", "validated": true, "ani": 79.3103, "matched_fragments": 511, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 79.1614, "matched_fragments": 357, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=KCTC 23561", 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2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 76.2139, "matched_fragments": 67, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008370345.1", "gtdb_species": "s__Marinobacter sp008370345", "ani": 100.0, "matched_fragments": 1379, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000708045.1", "gtdb_species": "s__Marinobacter nitratireducens", "ani": 81.7901, "matched_fragments": 758, "total_fragments": 1381, "gtdb_taxonomy": 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