{ "type": "genome", "identifier": "GCF_008373765.1", "organism": "Nocardioides antri", "title": "Nocardioides antri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea research institute of biotechnology bioscience", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008373765.1", "bioproject": "PRJNA224116", "biosample": "SAMN12676512", "wgs_master": "VUJW00000000.1", "refseq_category": "reference genome", "taxid": "2607659", "species_taxid": "2607659", "organism_name": "Nocardioides antri", "infraspecific_name": "strain=BN140041", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/12", "asm_name": "ASM837376v1", "asm_submitter": "Korea research institute of biotechnology bioscience", "gbrs_paired_asm": "GCA_008373765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/373/765/GCF_008373765.1_ASM837376v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4190154", "genome_size_ungapped": "4189809", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "237", "contig_count": "237", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008373765.1-RS_2024_07_31", "annotation_date": "2024-07-31", "total_gene_count": "4182", "protein_coding_gene_count": "4082", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-12", "dateModified": "2019-09-12", "datePublished": "2019-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides antri" ], "sample_taxid": [ "2607659" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Chungbuk" ], "sample_host_location_id": [], "data_size": "1.120 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4190154", "Number of Sequences": "237", "Longest Sequences (bp)": "1076775", "N50 (bp)": "355496", "Gap Ratio (%)": "0.008950", "GCcontent (%)": "71.0", "Number of CDSs": "4110", "Average Protein Length": "311.8", "Coding Ratio (%)": "91.8", "Number of rRNAs": "5", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides antri", "strain": "strain=BN140041", "accession": "GCA_008373765.1", "taxid": 2607659, "species_taxid": 2607659, 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"validated": true, "ani": 84.7927, "matched_fragments": 966, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides stalactiti", "strain": "strain=1.0914", "accession": "GCA_014180715.1", "taxid": 2755356, "species_taxid": 2755356, "relation_to_type": "type", "validated": true, "ani": 84.0613, "matched_fragments": 874, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 83.4287, "matched_fragments": 949, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides thalensis", "strain": "strain=DSM 103833", "accession": "GCA_013410655.1", "taxid": 1914755, "species_taxid": 1914755, "relation_to_type": "type", "validated": true, "ani": 82.6969, "matched_fragments": 879, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humi", "strain": "strain=DCY24", "accession": "GCA_006494775.1", "taxid": 449461, "species_taxid": 449461, "relation_to_type": "type", "validated": true, "ani": 81.752, "matched_fragments": 835, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 81.4547, "matched_fragments": 798, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 80.8709, "matched_fragments": 726, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 80.7085, "matched_fragments": 682, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 80.4005, "matched_fragments": 734, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 80.3797, "matched_fragments": 745, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 80.0353, "matched_fragments": 649, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides coralli", "strain": "strain=SCSIO 67246", "accession": "GCA_019880385.1", "taxid": 2872154, "species_taxid": 2872154, "relation_to_type": "type", "validated": true, "ani": 79.9332, "matched_fragments": 584, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides acrostichi", "strain": "strain=CBS4Y-1", "accession": "GCA_015319165.1", "taxid": 2784339, "species_taxid": 2784339, "relation_to_type": "type", "validated": true, "ani": 79.5666, "matched_fragments": 570, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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