{ "type": "genome", "identifier": "GCF_008374075.1", "organism": "Rubripirellula obstinata", "title": "Rubripirellula obstinata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Radboud Universiteit Nijmegen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008374075.1", "bioproject": "PRJNA224116", "biosample": "SAMN10980019", "wgs_master": "VRLW00000000.1", "refseq_category": "reference genome", "taxid": "406547", "species_taxid": "406547", "organism_name": "Rubripirellula obstinata", "infraspecific_name": "strain=LF1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/12", "asm_name": "ASM837407v1", "asm_submitter": "Radboud Universiteit Nijmegen", "gbrs_paired_asm": "GCA_008374075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/374/075/GCF_008374075.1_ASM837407v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7094218", "genome_size_ungapped": "7094218", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008374075.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5246", "protein_coding_gene_count": "5142", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-12", "dateModified": "2019-09-12", "datePublished": "2019-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Rubripirellula obstinata" ], "sample_taxid": [ "406547" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.926 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7094218", "Number of Sequences": "27", "Longest Sequences (bp)": "6586311", "N50 (bp)": "6586311", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.3", "Number of CDSs": "5196", "Average Protein Length": "361.4", "Coding Ratio (%)": "79.4", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rubripirellula obstinata", "strain": "strain=LF1", "accession": "GCA_008374075.1", "taxid": 406547, "species_taxid": 406547, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2348, "total_fragments": 2350, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rubripirellula obstinata", "strain": "strain=CECT 8602", "accession": "GCA_001642955.1", "taxid": 406547, "species_taxid": 406547, "relation_to_type": "type", "validated": true, "ani": 99.8492, "matched_fragments": 2022, "total_fragments": 2350, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodopirellula rubra", "strain": "strain=CECT 8075", "accession": "GCA_014192335.1", "taxid": 980271, "species_taxid": 980271, "relation_to_type": "type", "validated": true, "ani": 78.1843, "matched_fragments": 224, "total_fragments": 2350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula amarantea", "strain": "strain=Pla22", "accession": "GCA_007859865.1", "taxid": 2527999, "species_taxid": 2527999, "relation_to_type": "type", "validated": true, "ani": 78.0145, "matched_fragments": 277, "total_fragments": 2350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula tenax", "strain": "strain=Poly51", "accession": "GCA_007860125.1", "taxid": 2528015, "species_taxid": 2528015, "relation_to_type": "type", "validated": true, "ani": 77.7266, "matched_fragments": 321, "total_fragments": 2350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula reticaptiva", "strain": "strain=Poly59", "accession": "GCA_007860175.1", "taxid": 2528013, "species_taxid": 2528013, "relation_to_type": "type", "validated": true, "ani": 77.309, "matched_fragments": 285, "total_fragments": 2350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula bahusiensis", "strain": "strain=SWK21", "accession": "GCA_002727185.1", "taxid": 2014065, "species_taxid": 2014065, "relation_to_type": "type", "validated": true, "ani": 77.2872, "matched_fragments": 199, "total_fragments": 2350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula lacrimiformis", "strain": "strain=K22.7", "accession": "GCA_007741535.1", "taxid": 1930273, "species_taxid": 1930273, "relation_to_type": "type", "validated": true, "ani": 77.2164, "matched_fragments": 321, "total_fragments": 2350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula europaea", "strain": "strain=6C", "accession": "GCA_000338295.1", "taxid": 1263866, "species_taxid": 1263866, "relation_to_type": "type", "validated": true, "ani": 76.9107, "matched_fragments": 198, "total_fragments": 2350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novipirellula artificiosorum", "strain": "strain=Poly41", "accession": "GCA_007860135.1", "taxid": 2528016, "species_taxid": 2528016, "relation_to_type": "type", "validated": true, "ani": 76.779, "matched_fragments": 161, "total_fragments": 2350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula islandica", "strain": 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