{ "type": "genome", "identifier": "GCF_008580665.1", "organism": "Zafaria cholistanensis", "title": "Zafaria cholistanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Culture Collection of Pakistan (NCCP), Bio-resources Conservation Institute (BCI), National Agricultural Research Centre (NARC), Park Road, Islamabad-45500, Pakistan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008580665.1", "bioproject": "PRJNA224116", "biosample": "SAMD00178857", "wgs_master": "BKDJ00000000.1", "refseq_category": "reference genome", "taxid": "1682741", "species_taxid": "1682741", "organism_name": "Zafaria cholistanensis", "infraspecific_name": "strain=NCCP-1664", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/12", "asm_name": "NCCP-1664", "asm_submitter": "National Culture Collection of Pakistan (NCCP), Bio-resources Conservation Institute (BCI), National Agricultural Research Centre (NARC), Park Road, Islamabad-45500, Pakistan", "gbrs_paired_asm": "GCA_008580665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/580/665/GCF_008580665.1_NCCP-1664", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3291617", "genome_size_ungapped": "3291577", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008580665.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "2992", "protein_coding_gene_count": "2881", "non_coding_gene_count": "63", "pubmed_id": "34159434;33459818" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-12", "dateModified": "2019-09-12", "datePublished": "2019-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Zafaria cholistanensis" ], "sample_taxid": [ "1682741" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pakistan:Cholistan desert" ], "sample_host_location_id": [], "data_size": "0.897 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3291617", "Number of Sequences": "50", "Longest Sequences (bp)": "573704", "N50 (bp)": "192879", "Gap Ratio (%)": "0.001215", "GCcontent (%)": "70.0", "Number of CDSs": "2960", "Average Protein Length": "326.4", "Coding Ratio (%)": "88.1", "Number of rRNAs": "2", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, 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