{ "type": "genome", "identifier": "GCF_008630495.1", "organism": "Alkalicaulis satelles", "title": "Alkalicaulis satelles", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center of Biotechnology RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008630495.1", "bioproject": "PRJNA224116", "biosample": "SAMN12722784", "wgs_master": "VWOJ00000000.1", "refseq_category": "reference genome", "taxid": "2609175", "species_taxid": "2609175", "organism_name": "Alkalicaulis satelles", "infraspecific_name": "strain=G-192", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/20", "asm_name": "ASM863049v1", "asm_submitter": "Research Center of Biotechnology RAS", "gbrs_paired_asm": "GCA_008630495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/630/495/GCF_008630495.1_ASM863049v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2888634", "genome_size_ungapped": "2888634", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008630495.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2786", "protein_coding_gene_count": "2726", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-20", "dateModified": "2019-09-20", "datePublished": "2019-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Alkalicaulis satelles" ], "sample_taxid": [ "2609175" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Moscow" ], "sample_host_location_id": [], "data_size": "0.788 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2888634", "Number of Sequences": "8", "Longest Sequences (bp)": "1173363", "N50 (bp)": "903532", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.8", "Number of CDSs": "2744", "Average Protein Length": "319.9", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinicauda algicola", "strain": "strain=RMAR8-3", "accession": "GCA_017161425.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 78.8025, "matched_fragments": 433, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda algicola", "strain": "strain=JCM 31718", "accession": "GCA_004793685.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 78.7698, "matched_fragments": 432, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 78.7316, "matched_fragments": 406, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycocaulis alkaliphilus", "strain": "strain=CGMCC 1.12428", "accession": "GCA_014637625.1", "taxid": 1434191, "species_taxid": 1434191, "relation_to_type": "type", "validated": true, "ani": 78.6341, "matched_fragments": 385, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycocaulis alkaliphilus", "strain": "strain=6B-8", "accession": "GCA_004000605.1", "taxid": 1434191, "species_taxid": 1434191, "relation_to_type": "type", "validated": true, "ani": 78.5635, "matched_fragments": 389, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycocaulis albus", "strain": "strain=CGMCC 1.12766", "accession": "GCA_014639075.1", "taxid": 1382801, "species_taxid": 1382801, "relation_to_type": "type", "validated": true, "ani": 78.3686, "matched_fragments": 376, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda pacifica", "strain": "strain=CGMCC 1.11031", "accession": "GCA_014636415.1", "taxid": 1133559, "species_taxid": 1133559, "relation_to_type": "type", "validated": true, "ani": 78.208, "matched_fragments": 332, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda pacifica", "strain": "strain=P-1 km-3", "accession": "GCA_004793635.1", "taxid": 1133559, "species_taxid": 1133559, "relation_to_type": "type", "validated": true, "ani": 78.2028, "matched_fragments": 333, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda pacifica", "strain": "strain=P-1 km-3", "accession": "GCA_009806145.1", "taxid": 1133559, "species_taxid": 1133559, "relation_to_type": "type", "validated": true, "ani": 78.1558, "matched_fragments": 324, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maricaulis salignorans", "strain": "strain=DSM 16077", "accession": "GCA_900103475.1", "taxid": 144026, "species_taxid": 144026, "relation_to_type": "type", "validated": true, "ani": 77.2366, "matched_fragments": 183, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter aminoxidans", "strain": "strain=ATCC BAA-299", "accession": "GCA_023571765.1", "taxid": 186280, "species_taxid": 186280, "relation_to_type": "type", "validated": true, "ani": 76.7312, "matched_fragments": 153, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus flavus", "strain": "strain=D11M-2", "accession": "GCA_022559625.1", "taxid": 1526572, "species_taxid": 1526572, "relation_to_type": "type", "validated": true, "ani": 76.5806, "matched_fragments": 112, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 76.5756, "matched_fragments": 106, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alsobacter metallidurans", "strain": "strain=CGMCC 1.12214", "accession": "GCA_014636935.1", "taxid": 340221, "species_taxid": 340221, "relation_to_type": "type", "validated": true, "ani": 76.281, "matched_fragments": 120, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 76.2763, "matched_fragments": 92, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 76.1914, "matched_fragments": 83, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 76.1316, "matched_fragments": 99, "total_fragments": 961, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008630495.1", "gtdb_species": "s__Oceanicaulis satelles", "ani": 100.0, "matched_fragments": 961, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Oceanicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016124675.1", "gtdb_species": "s__Oceanicaulis sp016124675", "ani": 83.404, "matched_fragments": 727, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Oceanicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007050995.1", "gtdb_species": "s__Glycocaulis profundi", "ani": 79.4757, "matched_fragments": 499, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Glycocaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000152745.1", "gtdb_species": "s__Oceanicaulis sp000152745", "ani": 79.0882, "matched_fragments": 449, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Oceanicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000420265.1", "gtdb_species": "s__Oceanicaulis alexandrii", "ani": 78.9413, "matched_fragments": 400, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Oceanicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.56", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_017161425.1", "gtdb_species": "s__Marinicauda algicola", "ani": 78.7826, "matched_fragments": 435, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Marinicauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003122085.1", "gtdb_species": "s__WD6-1 sp003122085", "ani": 78.7575, "matched_fragments": 403, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__WD6-1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004000605.1", "gtdb_species": "s__Glycocaulis alkaliphilus", "ani": 78.5795, "matched_fragments": 387, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Glycocaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003046365.1", "gtdb_species": "s__Oceanicaulis sp003046365", "ani": 78.4212, "matched_fragments": 362, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Oceanicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.56", "min_intra_species_ani": "96.56", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014639075.1", "gtdb_species": "s__Glycocaulis albus", "ani": 78.3474, "matched_fragments": 378, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Glycocaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004793635.1", "gtdb_species": "s__Marinicauda pacifica", "ani": 78.2139, "matched_fragments": 332, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Marinicauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014636935.1", "gtdb_species": "s__Alsobacter metallidurans", "ani": 76.2653, "matched_fragments": 121, "total_fragments": 961, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Alsobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Alkalicaulis", "satelles" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }