{ "type": "genome", "identifier": "GCF_008630535.1", "organism": "Saccharopolyspora hirsuta", "title": "Saccharopolyspora hirsuta", "description": "na", "data type": "Genome sequencing and assembly", "organization": "PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008630535.1", "bioproject": "PRJNA224116", "biosample": "SAMN12725943", "wgs_master": "VWPH00000000.1", "refseq_category": "reference genome", "taxid": "1837", "species_taxid": "1837", "organism_name": "Saccharopolyspora hirsuta", "infraspecific_name": "strain=VKM Ac-666", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/20", "asm_name": "ASM863053v1", "asm_submitter": "PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS", "gbrs_paired_asm": "GCA_008630535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/630/535/GCF_008630535.1_ASM863053v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7549392", "genome_size_ungapped": "7549392", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008630535.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "6905", "protein_coding_gene_count": "6798", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-20", "dateModified": "2019-09-20", "datePublished": "2019-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharopolyspora hirsuta" ], "sample_taxid": [ "1837" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Trinidad and Tobago: Trinidad" ], "sample_host_location_id": [], "data_size": "2.003 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7549392", "Number of Sequences": "46", "Longest Sequences (bp)": "688257", "N50 (bp)": "504440", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.4", "Number of CDSs": "6887", "Average Protein Length": "323.3", "Coding Ratio (%)": "88.5", "Number of rRNAs": "1", "Number of tRNAs": "69", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { 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"Saccharopolyspora hordei", "strain": "strain=DSM 44065", "accession": "GCA_013410345.1", "taxid": 1838, "species_taxid": 1838, "relation_to_type": "type", "validated": true, "ani": 89.5884, "matched_fragments": 1667, "total_fragments": 2498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora elongata", "strain": "strain=7K502", "accession": "GCA_004348985.1", "taxid": 2530387, "species_taxid": 2530387, "relation_to_type": "type", "validated": true, "ani": 85.9697, "matched_fragments": 1758, "total_fragments": 2498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora shandongensis", "strain": "strain=CGMCC 4.3530", "accession": "GCA_900106995.1", "taxid": 418495, "species_taxid": 418495, "relation_to_type": "type", "validated": true, "ani": 85.7425, "matched_fragments": 1775, "total_fragments": 2498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora spinosa", "strain": "strain=NRRL 18395", "accession": "GCA_000194155.1", "taxid": 60894, "species_taxid": 60894, "relation_to_type": "type", "validated": true, "ani": 84.92, "matched_fragments": 1470, "total_fragments": 2498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora aridisoli", "strain": "strain=16K404", "accession": "GCA_004348445.1", "taxid": 2530385, "species_taxid": 2530385, "relation_to_type": "type", "validated": true, "ani": 82.9866, "matched_fragments": 1281, "total_fragments": 2498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora dendranthemae", "strain": "strain=DSM 46699", "accession": "GCA_007829955.1", "taxid": 1181886, "species_taxid": 1181886, "relation_to_type": "type", "validated": true, "ani": 82.8282, "matched_fragments": 1323, "total_fragments": 2498, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, 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"accession": "GCF_007829955.1", "gtdb_species": "s__Saccharopolyspora dendranthemae", "ani": 82.7939, "matched_fragments": 1329, "total_fragments": 2498, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.096, "doubling_h": null, "growth_tmp": 33.0, "optimum_tmp": 30.0, "optimum_ph": 7.178, "genome_size": 7788049.0, "gc_content": 67.94, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.833, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.166, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Saccharopolyspora", "hirsuta" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }