{ "type": "genome", "identifier": "GCF_008632335.1", "organism": "Thiohalocapsa marina", "title": "Thiohalocapsa marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bellevue University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008632335.1", "bioproject": "PRJNA224116", "biosample": "SAMN12739217", "wgs_master": "VWXX00000000.1", "refseq_category": "reference genome", "taxid": "424902", "species_taxid": "424902", "organism_name": "Thiohalocapsa marina", "infraspecific_name": "strain=DSM 19078", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/21", "asm_name": "ASM863233v1", "asm_submitter": "Bellevue University", "gbrs_paired_asm": "GCA_008632335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/632/335/GCF_008632335.1_ASM863233v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4301207", "genome_size_ungapped": "4301207", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "97", "contig_count": "97", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008632335.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3897", "protein_coding_gene_count": "3781", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-21", "dateModified": "2019-09-21", "datePublished": "2019-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Thiohalocapsa marina" ], "sample_taxid": [ "424902" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Visakhapatnam, near Bheemli" ], "sample_host_location_id": [], "data_size": "1.191 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4301207", "Number of Sequences": "97", "Longest Sequences (bp)": "333289", "N50 (bp)": "96455", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "3796", "Average Protein Length": "328.8", "Coding Ratio (%)": "87.1", "Number of rRNAs": "5", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1388, "total_fragments": 1393, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thiohalocapsa halophila", "strain": "strain=DSM 6210", "accession": "GCA_016583825.1", "taxid": 69359, "species_taxid": 69359, "relation_to_type": "type", "validated": true, "ani": 79.6839, "matched_fragments": 614, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_016583515.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 78.9818, "matched_fragments": 428, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium glycolicum", "strain": "strain=DSM 11080", "accession": "GCA_016584085.1", "taxid": 85075, "species_taxid": 85075, "relation_to_type": "type", "validated": true, "ani": 78.9403, "matched_fragments": 452, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 78.937, "matched_fragments": 436, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 78.8478, "matched_fragments": 437, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium salexigens", "strain": "strain=DSM 4395", "accession": "GCA_016653295.1", "taxid": 49447, "species_taxid": 49447, "relation_to_type": "type", "validated": true, "ani": 78.7851, "matched_fragments": 427, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", 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"species_taxid": 391920, "relation_to_type": "type", "validated": true, "ani": 78.3217, "matched_fragments": 449, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiorhodococcus minor", "strain": "strain=DSM 11518", "accession": "GCA_010820565.1", "taxid": 57489, "species_taxid": 57489, "relation_to_type": "type", "validated": true, "ani": 78.0294, "matched_fragments": 391, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa bogorovii", "strain": "strain=BBS", "accession": "GCA_021228795.1", "taxid": 521689, "species_taxid": 521689, "relation_to_type": "type", "validated": true, "ani": 77.9255, "matched_fragments": 302, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": 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"total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_002890935.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 76.1261, "matched_fragments": 144, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferruginivarius sediminum", "strain": "strain=WD2A32", "accession": "GCA_003344765.1", "taxid": 2661937, "species_taxid": 2661937, "relation_to_type": "type", "validated": true, "ani": 76.0483, "matched_fragments": 72, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5", "accession": "GCA_000067045.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 75.6174, "matched_fragments": 65, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermaerobacter marianensis", "strain": "strain=DSM 12885", "accession": "GCA_000184705.1", "taxid": 73919, "species_taxid": 73919, "relation_to_type": "type", "validated": true, "ani": 75.5977, "matched_fragments": 68, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 75.422, "matched_fragments": 67, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=LMG 7603", "accession": "GCA_014174315.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 75.2367, "matched_fragments": 65, "total_fragments": 1393, "ani_threshold": 95, "status": "below_threshold" } ], 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