{ "type": "genome", "identifier": "GCF_008638345.1", "organism": "Pseudomonas saliphila", "title": "Pseudomonas saliphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology,Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008638345.1", "bioproject": "PRJNA224116", "biosample": "SAMN11954203", "wgs_master": "VTVA00000000.1", "refseq_category": "reference genome", "taxid": "2586906", "species_taxid": "2586906", "organism_name": "Pseudomonas saliphila", "infraspecific_name": "strain=16W4-4-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/23", "asm_name": "ASM863834v1", "asm_submitter": "Institute of Microbiology,Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_008638345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/638/345/GCF_008638345.1_ASM863834v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4370183", "genome_size_ungapped": "4370183", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008638345.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4008", "protein_coding_gene_count": "3900", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-23", "dateModified": "2019-09-23", "datePublished": "2019-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas saliphila" ], "sample_taxid": [ "2586906" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.242 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4370183", "Number of Sequences": "59", "Longest Sequences (bp)": "435919", "N50 (bp)": "223600", "Gap Ratio (%)": "0.000801", "GCcontent (%)": "58.5", "Number of CDSs": "3966", "Average Protein Length": "326.9", "Coding Ratio (%)": "89.0", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas saliphila", "strain": "strain=16W4-4-3", "accession": "GCA_008638345.1", "taxid": 2586906, "species_taxid": 2586906, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1429, "total_fragments": 1431, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas profundi", "strain": "strain=M5", "accession": "GCA_008638305.1", "taxid": 1981513, "species_taxid": 1981513, "relation_to_type": "type", "validated": true, "ani": 85.2384, "matched_fragments": 1054, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas litoralis", "strain": "strain=2SM5", "accession": "GCA_900105005.1", "taxid": 797277, "species_taxid": 797277, "relation_to_type": "type", "validated": true, "ani": 79.99, "matched_fragments": 460, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=CGMCC 1.9095", "accession": "GCA_900114735.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 79.162, 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"below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_024448505.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 77.5931, "matched_fragments": 265, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5526, "matched_fragments": 268, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 77.413, "matched_fragments": 276, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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