{ "type": "genome", "identifier": "GCF_008638355.1", "organism": "Nocardiopsis deserti", "title": "Nocardiopsis deserti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008638355.1", "bioproject": "PRJNA224116", "biosample": "SAMN12631801", "wgs_master": "VWVS00000000.1", "refseq_category": "reference genome", "taxid": "2605988", "species_taxid": "2605988", "organism_name": "Nocardiopsis deserti", "infraspecific_name": "strain=H13", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/23", "asm_name": "ASM863835v1", "asm_submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "GCA_008638355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/638/355/GCF_008638355.1_ASM863835v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7251616", "genome_size_ungapped": "7251566", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008638355.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6335", "protein_coding_gene_count": "6156", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-23", "dateModified": "2019-09-23", "datePublished": "2019-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis deserti" ], "sample_taxid": [ "2605988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Atacama Desert" ], "sample_host_location_id": [], "data_size": "1.943 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7251616", "Number of Sequences": "59", "Longest Sequences (bp)": "721380", "N50 (bp)": "398233", "Gap Ratio (%)": "0.000690", "GCcontent (%)": "71.9", "Number of CDSs": "6384", "Average Protein Length": "318.9", "Coding Ratio (%)": "84.2", "Number of rRNAs": "4", "Number of tRNAs": "76", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis deserti", "strain": "strain=H13", "accession": "GCA_008638355.1", "taxid": 2605988, "species_taxid": 2605988, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2387, "total_fragments": 2389, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=NBRC 13392", "accession": "GCA_001552695.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 95.7677, "matched_fragments": 1933, "total_fragments": 2389, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=ATCC 23612", "accession": "GCA_012396365.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 95.758, "matched_fragments": 1993, "total_fragments": 2389, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 94.3526, "matched_fragments": 1895, "total_fragments": 2389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=NCTC10488", "accession": "GCA_900638215.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 94.3132, "matched_fragments": 1900, "total_fragments": 2389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=ATCC 23218", "accession": "GCA_012396345.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 94.2982, "matched_fragments": 1785, "total_fragments": 2389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis", "strain": "strain=D1", "accession": "GCA_902825375.1", "taxid": 2580523, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 94.1381, "matched_fragments": 1570, "total_fragments": 2389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis 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"accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 81.7141, "matched_fragments": 1050, "total_fragments": 2389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 79.7812, "matched_fragments": 809, "total_fragments": 2389, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 79.7625, "matched_fragments": 831, "total_fragments": 2389, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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