{ "type": "genome", "identifier": "GCF_008641105.1", "organism": "Halopseudomonas salina", "title": "Halopseudomonas salina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology,Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008641105.1", "bioproject": "PRJNA224116", "biosample": "SAMN12645870", "wgs_master": "VTTI00000000.1", "refseq_category": "na", "taxid": "1323744", "species_taxid": "1323744", "organism_name": "Halopseudomonas salina", "infraspecific_name": "strain=XCD-X85", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/23", "asm_name": "ASM864110v1", "asm_submitter": "Institute of Microbiology,Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_008641105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/641/105/GCF_008641105.1_ASM864110v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4256268", "genome_size_ungapped": "4254487", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008641105.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "3896", "protein_coding_gene_count": "3802", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-23", "dateModified": "2019-09-23", "datePublished": "2019-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopseudomonas salina" ], "sample_taxid": [ "1323744" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.209 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 16.67, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4256268", "Number of Sequences": "45", "Longest Sequences (bp)": "752206", "N50 (bp)": "355961", "Gap Ratio (%)": "0.041844", "GCcontent (%)": "57.5", "Number of CDSs": "3879", "Average Protein Length": "331.8", "Coding Ratio (%)": "90.7", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas salina", "strain": "strain=XCD-X85", "accession": "GCA_008641105.1", "taxid": 1323744, "species_taxid": 1323744, 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aureofaciens", "strain": "strain=DSM 6698", "accession": "GCA_003851905.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 77.266, "matched_fragments": 233, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas versuta", "strain": "strain=L10.10", "accession": "GCA_001294575.1", "taxid": 1788301, "species_taxid": 1788301, "relation_to_type": "type", "validated": true, "ani": 77.2221, "matched_fragments": 136, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas paraversuta", "strain": "strain=V4/DAB/S4/2a", "accession": "GCA_904063065.1", "taxid": 2750624, "species_taxid": 2750624, "relation_to_type": "type", "validated": true, "ani": 77.1034, "matched_fragments": 144, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 16.67, 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