{
    "type": "genome",
    "identifier": "GCF_008692785.1",
    "organism": "Salmonella enterica subsp. diarizonae",
    "title": "Salmonella enterica subsp. diarizonae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Gothenburg - CCUG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008692785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12771134",
        "wgs_master": "VXJV00000000.1",
        "refseq_category": "na",
        "taxid": "59204",
        "species_taxid": "28901",
        "organism_name": "Salmonella enterica subsp. diarizonae",
        "infraspecific_name": "strain=CCUG 30040T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/24",
        "asm_name": "ASM869278v1",
        "asm_submitter": "University of Gothenburg - CCUG",
        "gbrs_paired_asm": "GCA_008692785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/692/785/GCF_008692785.1_ASM869278v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4929727",
        "genome_size_ungapped": "4929727",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "36",
        "contig_count": "36",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008692785.1-RS_2024_06_09",
        "annotation_date": "2024-06-09",
        "total_gene_count": "4751",
        "protein_coding_gene_count": "4451",
        "non_coding_gene_count": "102",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-24",
    "dateModified": "2019-09-24",
    "datePublished": "2019-09-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Salmonella enterica subsp. diarizonae"
        ],
        "sample_taxid": [
            "59204"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.401 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4929727",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "797633",
        "N50 (bp)": "419449",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.4",
        "Number of CDSs": "4517",
        "Average Protein Length": "313.2",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "79",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Salmonella enterica subsp. diarizonae",
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                "species_taxid": 28901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica subsp. diarizonae",
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                "accession": "GCA_016030095.1",
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                "species_taxid": 28901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9953,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica subsp. salamae",
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                "accession": "GCA_008692775.1",
                "taxid": 59202,
                "species_taxid": 28901,
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                "ani": 95.8214,
                "matched_fragments": 1299,
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                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica subsp. salamae",
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                "species_taxid": 28901,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1295,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica subsp. indica",
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                "accession": "GCA_018033035.1",
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                "species_taxid": 28901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.0816,
                "matched_fragments": 1292,
                "total_fragments": 1624,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=LT2",
                "accession": "GCA_002289225.1",
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                "species_taxid": 28901,
                "relation_to_type": "type",
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                "ani": 95.0765,
                "matched_fragments": 1268,
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                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=PartC-Senterica-RM8376",
                "accession": "GCA_022869965.1",
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                "relation_to_type": "suspected-type",
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            },
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                "organism_name": "Salmonella enterica subsp. houtenae",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter rodentium",
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                "species_taxid": 67825,
                "relation_to_type": "type",
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                "ani": 83.1241,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Enterobacter roggenkampii",
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                "accession": "GCA_024390995.1",
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            },
            {
                "organism_name": "Pseudocitrobacter corydidari",
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            {
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            {
                "organism_name": "Pantoea deleyi",
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    "_genome_taxon": [
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}