{
    "type": "genome",
    "identifier": "GCF_008692945.1",
    "organism": "Lactococcus lactis subsp. hordniae",
    "title": "Lactococcus lactis subsp. hordniae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Gothenburg - CCUG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008692945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12771127",
        "wgs_master": "VXKC00000000.1",
        "refseq_category": "na",
        "taxid": "203404",
        "species_taxid": "1358",
        "organism_name": "Lactococcus lactis subsp. hordniae",
        "infraspecific_name": "strain=CCUG 32210T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/24",
        "asm_name": "ASM869294v1",
        "asm_submitter": "University of Gothenburg - CCUG",
        "gbrs_paired_asm": "GCA_008692945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/692/945/GCF_008692945.1_ASM869294v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2445873",
        "genome_size_ungapped": "2445873",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "71",
        "contig_count": "71",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008692945.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2577",
        "protein_coding_gene_count": "2282",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-24",
    "dateModified": "2019-09-24",
    "datePublished": "2019-09-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactococcus lactis subsp. hordniae"
        ],
        "sample_taxid": [
            "203404"
        ],
        "sample_host_organism": [
            "leaf hopper"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.687 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2445873",
        "Number of Sequences": "71",
        "Longest Sequences (bp)": "149719",
        "N50 (bp)": "81572",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.8",
        "Number of CDSs": "2641",
        "Average Protein Length": "260.5",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "5",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=CCUG 32210T",
                "accession": "GCA_008692945.1",
                "taxid": 203404,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 781,
                "total_fragments": 783,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=DSM 20450",
                "accession": "GCA_002441785.1",
                "taxid": 203404,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9787,
                "matched_fragments": 732,
                "total_fragments": 783,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=NBRC 100931",
                "accession": "GCA_001591725.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9758,
                "matched_fragments": 750,
                "total_fragments": 783,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. lactis",
                "strain": "strain=ATCC 19435",
                "accession": "GCA_001456385.1",
                "taxid": 1360,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.2617,
                "matched_fragments": 632,
                "total_fragments": 783,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. lactis",
                "strain": "strain=ATCC 19435",
                "accession": "GCA_004354485.1",
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                "validated": true,
                "ani": 97.2037,
                "matched_fragments": 646,
                "total_fragments": 783,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus formosensis subsp. bovis",
                "strain": "strain=LMG 30663",
                "accession": "GCA_018403725.1",
                "taxid": 1850438,
                "species_taxid": 1281486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4971,
                "matched_fragments": 128,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus paracarnosus",
                "strain": "strain=TMW 2.1615",
                "accession": "GCA_006770285.1",
                "taxid": 2749962,
                "species_taxid": 2749962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2378,
                "matched_fragments": 54,
                "total_fragments": 783,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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            {
                "accession": "GCF_900099625.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 223,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001591705.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "97.45",
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                "num_clustered_genomes": 70,
                "status": "-"
            },
            {
                "accession": "GCF_014905395.1",
                "gtdb_species": "s__Lactococcus taiwanensis",
                "ani": 84.3718,
                "matched_fragments": 336,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_004210295.1",
                "gtdb_species": "s__Lactococcus sp004210295",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_006965445.1",
                "gtdb_species": "s__Lactococcus sp006965445",
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                "matched_fragments": 301,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_003627095.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_009601015.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_018403745.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
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                "num_clustered_genomes": 8,
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            },
            {
                "accession": "GCF_009601055.1",
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            },
            {
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            },
            {
                "accession": "GCF_900101445.1",
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                "num_clustered_genomes": 9,
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            },
            {
                "accession": "GCF_000154985.1",
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                "num_clustered_genomes": 24,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": -0.302,
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        "rRNA16S_genes": 6.0,
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        "bacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
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        "lactis",
        "subsp.",
        "hordniae"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}