{
    "type": "genome",
    "identifier": "GCF_008692985.1",
    "organism": "Lactococcus garvieae subsp. garvieae",
    "title": "Lactococcus garvieae subsp. garvieae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Gothenburg - CCUG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008692985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12771126",
        "wgs_master": "VXKD00000000.1",
        "refseq_category": "na",
        "taxid": "1890280",
        "species_taxid": "1363",
        "organism_name": "Lactococcus garvieae subsp. garvieae",
        "infraspecific_name": "strain=CCUG 32208T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/24",
        "asm_name": "ASM869298v1",
        "asm_submitter": "University of Gothenburg - CCUG",
        "gbrs_paired_asm": "GCA_008692985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/692/985/GCF_008692985.1_ASM869298v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2043653",
        "genome_size_ungapped": "2043653",
        "gc_percent": "38.500000",
        "replicon_count": "0",
        "scaffold_count": "48",
        "contig_count": "48",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008692985.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2083",
        "protein_coding_gene_count": "1979",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-24",
    "dateModified": "2019-09-24",
    "datePublished": "2019-09-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactococcus garvieae subsp. garvieae"
        ],
        "sample_taxid": [
            "1890280"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.581 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2043653",
        "Number of Sequences": "48",
        "Longest Sequences (bp)": "205900",
        "N50 (bp)": "99686",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.5",
        "Number of CDSs": "2016",
        "Average Protein Length": "293.6",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lactococcus garvieae subsp. garvieae",
                "strain": "strain=CCUG 32208T",
                "accession": "GCA_008692985.1",
                "taxid": 1890280,
                "species_taxid": 1363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 658,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus garvieae",
                "strain": "strain=NBRC 100934",
                "accession": "GCA_000739975.1",
                "taxid": 1363,
                "species_taxid": 1363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.984,
                "matched_fragments": 633,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus garvieae",
                "strain": "strain=DSM 20684",
                "accession": "GCA_002441675.1",
                "taxid": 1363,
                "species_taxid": 1363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9642,
                "matched_fragments": 627,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus garvieae",
                "strain": "strain=FDAARGOS_929",
                "accession": "GCA_016026695.1",
                "taxid": 1363,
                "species_taxid": 1363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9295,
                "matched_fragments": 655,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus petauri",
                "strain": "strain=159469",
                "accession": "GCA_002154895.1",
                "taxid": 1940789,
                "species_taxid": 1940789,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8001,
                "matched_fragments": 562,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus formosensis subsp. bovis",
                "strain": "strain=LMG 30663",
                "accession": "GCA_018403725.1",
                "taxid": 1850438,
                "species_taxid": 1281486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9716,
                "matched_fragments": 536,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000739975.1",
                "gtdb_species": "s__Lactococcus garvieae",
                "ani": 99.984,
                "matched_fragments": 633,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.58",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 26,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002154895.1",
                "gtdb_species": "s__Lactococcus petauri",
                "ani": 92.8001,
                "matched_fragments": 562,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "96.82",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 32,
                "status": "-"
            },
            {
                "accession": "GCF_018403745.1",
                "gtdb_species": "s__Lactococcus formosensis",
                "ani": 91.0569,
                "matched_fragments": 544,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_016758115.1",
                "gtdb_species": "s__Lactococcus sp002492185",
                "ani": 83.7997,
                "matched_fragments": 380,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_016027715.1",
                "gtdb_species": "s__Lactococcus garvieae_A",
                "ani": 82.8822,
                "matched_fragments": 424,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": -0.302,
        "doubling_h": -0.114,
        "growth_tmp": 32.333,
        "optimum_tmp": 34.5,
        "optimum_ph": 5.9,
        "genome_size": 2084354.6,
        "gc_content": 38.378,
        "coding_genes": 1886.5,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 61.25,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lactococcus",
        "garvieae",
        "subsp.",
        "garvieae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}