{
    "type": "genome",
    "identifier": "GCF_008692995.1",
    "organism": "Gemella haemolysans",
    "title": "Gemella haemolysans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Gothenburg - CCUG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008692995.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12771124",
        "wgs_master": "VXKF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1379",
        "species_taxid": "1379",
        "organism_name": "Gemella haemolysans",
        "infraspecific_name": "strain=CCUG 37985T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/24",
        "asm_name": "ASM869299v1",
        "asm_submitter": "University of Gothenburg - CCUG",
        "gbrs_paired_asm": "GCA_008692995.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/692/995/GCF_008692995.1_ASM869299v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1905342",
        "genome_size_ungapped": "1905342",
        "gc_percent": "30.500000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008692995.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "1749",
        "protein_coding_gene_count": "1680",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-24",
    "dateModified": "2019-09-24",
    "datePublished": "2019-09-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemella haemolysans"
        ],
        "sample_taxid": [
            "1379"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.522 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1905342",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "351835",
        "N50 (bp)": "210720",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.7",
        "Number of CDSs": "1686",
        "Average Protein Length": "315.9",
        "Coding Ratio (%)": "83.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gemella haemolysans",
                "strain": "strain=CCUG 37985T",
                "accession": "GCA_008692995.1",
                "taxid": 1379,
                "species_taxid": 1379,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 623,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gemella haemolysans",
                "strain": "strain=ATCC 10379",
                "accession": "GCA_000173915.1",
                "taxid": 1379,
                "species_taxid": 1379,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9731,
                "matched_fragments": 619,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gemella sanguinis",
                "strain": "strain=ATCC 700632",
                "accession": "GCA_000701685.1",
                "taxid": 84135,
                "species_taxid": 84135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5418,
                "matched_fragments": 340,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemella morbillorum",
                "strain": "strain=NCTC11323",
                "accession": "GCA_900476045.1",
                "taxid": 29391,
                "species_taxid": 29391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9847,
                "matched_fragments": 318,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemella morbillorum",
                "strain": "strain=FDAARGOS_1501",
                "accession": "GCA_020097435.1",
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                "species_taxid": 29391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9199,
                "matched_fragments": 307,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemella cuniculi",
                "strain": "strain=DSM 15828",
                "accession": "GCA_000425665.1",
                "taxid": 150240,
                "species_taxid": 150240,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3208,
                "matched_fragments": 268,
                "total_fragments": 625,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000173915.1",
                "gtdb_species": "s__Gemella haemolysans",
                "ani": 99.9731,
                "matched_fragments": 619,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001553035.1",
                "gtdb_species": "s__Gemella haemolysans_B",
                "ani": 94.0413,
                "matched_fragments": 500,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.59",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900766305.1",
                "gtdb_species": "s__Gemella sp900766305",
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                "matched_fragments": 500,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002871655.1",
                "gtdb_species": "s__Gemella sp002871655",
                "ani": 88.4415,
                "matched_fragments": 506,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_012273215.1",
                "gtdb_species": "s__Gemella haemolysans_A",
                "ani": 88.0301,
                "matched_fragments": 514,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_901873445.1",
                "gtdb_species": "s__Gemella haemolysans_C",
                "ani": 87.6251,
                "matched_fragments": 457,
                "total_fragments": 625,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": -0.302,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 1975535.5,
        "gc_content": 30.805,
        "coding_genes": 1602.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 42.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Gemella",
        "haemolysans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}