{ "type": "genome", "identifier": "GCF_008698145.1", "organism": "Bifidobacterium vespertilionis", "title": "Bifidobacterium vespertilionis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Bologna", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008698145.1", "bioproject": "PRJNA224116", "biosample": "SAMN10662177", "wgs_master": "RZNZ00000000.1", "refseq_category": "reference genome", "taxid": "2562524", "species_taxid": "2562524", "organism_name": "Bifidobacterium vespertilionis", "infraspecific_name": "strain=RST16", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/25", "asm_name": "ASM869814v1", "asm_submitter": "University of Bologna", "gbrs_paired_asm": "GCA_008698145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/698/145/GCF_008698145.1_ASM869814v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3075992", "genome_size_ungapped": "3075697", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008698145.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "2453", "protein_coding_gene_count": "2330", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-25", "dateModified": "2019-09-25", "datePublished": "2019-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium vespertilionis" ], "sample_taxid": [ "2562524" ], "sample_host_organism": [ "Rousettus aegyptiacus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Verona" ], "sample_host_location_id": [], "data_size": "0.852 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3075992", "Number of Sequences": "49", "Longest Sequences (bp)": "321282", "N50 (bp)": "160155", "Gap Ratio (%)": "0.009590", "GCcontent (%)": "64.2", "Number of CDSs": "2409", "Average Protein Length": "355.9", "Coding Ratio (%)": "83.6", "Number of rRNAs": "1", "Number of tRNAs": "62", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium vespertilionis", "strain": "strain=RST16", "accession": "GCA_008698145.1", "taxid": 2562524, "species_taxid": 2562524, "relation_to_type": "type", "validated": true, "ani": 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95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium platyrrhinorum", "strain": "strain=SMA15", "accession": "GCA_010667645.1", "taxid": 2661628, "species_taxid": 2661628, "relation_to_type": "type", "validated": true, "ani": 82.5238, "matched_fragments": 453, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 82.3564, "matched_fragments": 494, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium stellenboschense", "strain": "strain=DSM 23968", "accession": "GCA_000741785.1", "taxid": 762211, "species_taxid": 762211, "relation_to_type": "type", "validated": true, "ani": 82.2945, "matched_fragments": 438, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium scardovii", "strain": "strain=DSM 13734", "accession": "GCA_000770985.1", "taxid": 158787, "species_taxid": 158787, "relation_to_type": "type", "validated": true, "ani": 82.2659, "matched_fragments": 448, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium scardovii", "strain": "strain=DSM 13734", "accession": "GCA_001005065.1", "taxid": 158787, "species_taxid": 158787, "relation_to_type": "type", "validated": true, "ani": 82.1705, "matched_fragments": 460, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium catulorum", "strain": "strain=MRM 8.19", "accession": "GCA_003129925.1", "taxid": 1630173, "species_taxid": 1630173, "relation_to_type": "type", "validated": true, "ani": 81.3109, "matched_fragments": 355, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium 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"strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 76.1062, "matched_fragments": 122, "total_fragments": 1008, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008698145.1", "gtdb_species": "s__Bifidobacterium vespertilionis", "ani": 100.0, "matched_fragments": 1007, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_009299475.1", "gtdb_species": "s__Bifidobacterium avesanii", "ani": 86.824, "matched_fragments": 624, 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