{ "type": "genome", "identifier": "GCF_008704425.1", "organism": "Streptomyces fradiae ATCC 10745 = DSM 40063", "title": "Streptomyces fradiae ATCC 10745 = DSM 40063", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KAIST", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008704425.1", "bioproject": "PRJNA224116", "biosample": "SAMN07709097", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1319510", "species_taxid": "1906", "organism_name": "Streptomyces fradiae ATCC 10745 = DSM 40063", "infraspecific_name": "strain=ATCC 10745", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/26", "asm_name": "ASM870442v1", "asm_submitter": "KAIST", "gbrs_paired_asm": "GCA_008704425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/704/425/GCF_008704425.1_ASM870442v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6725579", "genome_size_ungapped": "6725579", "gc_percent": "74.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008704425.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "5789", "protein_coding_gene_count": "5584", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-26", "dateModified": "2019-09-26", "datePublished": "2019-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces fradiae ATCC 10745 = DSM 40063" ], "sample_taxid": [ "1319510" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.761 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6725579", "Number of Sequences": "1", "Longest Sequences (bp)": "6725579", "N50 (bp)": "6725579", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.7", "Number of CDSs": "5890", "Average Protein Length": "327.0", "Coding Ratio (%)": "85.9", "Number of rRNAs": "18", "Number of tRNAs": "91", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces fradiae", "strain": "strain=ATCC 10745", "accession": "GCA_008704425.1", "taxid": 1906, "species_taxid": 1906, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2239, 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"status": "conclusive" }, { "organism_name": "Streptomyces roseolilacinus", "strain": "strain=JCM 4335", "accession": "GCA_014649335.1", "taxid": 66904, "species_taxid": 66904, "relation_to_type": "type", "validated": true, "ani": 89.1864, "matched_fragments": 1682, "total_fragments": 2241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces somaliensis", "strain": "strain=DSM 40738", "accession": "GCA_024349285.1", "taxid": 78355, "species_taxid": 78355, "relation_to_type": "type", "validated": true, "ani": 88.2571, "matched_fragments": 1323, "total_fragments": 2241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sudanensis", "strain": "strain=SD 504", "accession": "GCA_023614315.1", "taxid": 436397, "species_taxid": 436397, "relation_to_type": "type", "validated": true, "ani": 88.1233, "matched_fragments": 1366, "total_fragments": 2241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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