{
    "type": "genome",
    "identifier": "GCF_008704715.1",
    "organism": "Streptomyces chartreusis",
    "title": "Streptomyces chartreusis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "KAIST",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008704715.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07709106",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1969",
        "species_taxid": "1969",
        "organism_name": "Streptomyces chartreusis",
        "infraspecific_name": "strain=ATCC 14922",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/26",
        "asm_name": "ASM870471v1",
        "asm_submitter": "KAIST",
        "gbrs_paired_asm": "GCA_008704715.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/704/715/GCF_008704715.1_ASM870471v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9912098",
        "genome_size_ungapped": "9912098",
        "gc_percent": "71.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008704715.1-RS_2024_04_23",
        "annotation_date": "2024-04-23",
        "total_gene_count": "8688",
        "protein_coding_gene_count": "8512",
        "non_coding_gene_count": "94",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-26",
    "dateModified": "2019-09-26",
    "datePublished": "2019-09-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces chartreusis"
        ],
        "sample_taxid": [
            "1969"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.657 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 3.12,
        "strain_heterogeneity": 66.67,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9912098",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "9912098",
        "N50 (bp)": "9912098",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.0",
        "Number of CDSs": "8756",
        "Average Protein Length": "339.8",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "18",
        "Number of tRNAs": "88",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces chartreusis",
                "strain": "strain=ATCC 14922",
                "accession": "GCA_008704715.1",
                "taxid": 1969,
                "species_taxid": 1969,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3304,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces chartreusis",
                "strain": "strain=JCM 4570",
                "accession": "GCA_014650315.1",
                "taxid": 1969,
                "species_taxid": 1969,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9949,
                "matched_fragments": 3279,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces lanatus",
                "strain": "strain=JCM 4588",
                "accession": "GCA_014655715.1",
                "taxid": 66900,
                "species_taxid": 66900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.3884,
                "matched_fragments": 2518,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces ferrugineus",
                "strain": "strain=CCTCC AA2014009",
                "accession": "GCA_015160855.1",
                "taxid": 1413221,
                "species_taxid": 1413221,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0479,
                "matched_fragments": 2374,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces cyaneus",
                "strain": "strain=CGMCC 4.1671",
                "accession": "GCA_004028635.1",
                "taxid": 1904,
                "species_taxid": 1904,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3401,
                "matched_fragments": 2388,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces cyaneochromogenes",
                "strain": "strain=MK-45",
                "accession": "GCA_003963535.1",
                "taxid": 2496836,
                "species_taxid": 2496836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3241,
                "matched_fragments": 2464,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces curacoi",
                "strain": "strain=DSM 40107",
                "accession": "GCA_001513975.1",
                "taxid": 146536,
                "species_taxid": 146536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1644,
                "matched_fragments": 2170,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces caeruleatus",
                "strain": "strain=NRRL B-24802",
                "accession": "GCA_001514235.1",
                "taxid": 661399,
                "species_taxid": 661399,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1566,
                "matched_fragments": 2341,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces zinciresistens",
                "strain": "strain=K42",
                "accession": "GCA_000225525.2",
                "taxid": 1073330,
                "species_taxid": 1073330,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3248,
                "matched_fragments": 1774,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces davaonensis",
                "strain": "strain=JCM 4913",
                "accession": "GCA_000349325.1",
                "taxid": 348043,
                "species_taxid": 348043,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1538,
                "matched_fragments": 2100,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces justiciae",
                "strain": "strain=3R004",
                "accession": "GCA_015163075.1",
                "taxid": 2780140,
                "species_taxid": 2780140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1043,
                "matched_fragments": 2191,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces purpurascens",
                "strain": "strain=DSM 40310",
                "accession": "GCA_021390235.1",
                "taxid": 1924,
                "species_taxid": 1924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.7914,
                "matched_fragments": 2067,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces blattellae",
                "strain": "strain=TRM63209",
                "accession": "GCA_009709555.1",
                "taxid": 2569855,
                "species_taxid": 2569855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6952,
                "matched_fragments": 1824,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces plumbidurans",
                "strain": "strain=KC 17012",
                "accession": "GCA_019857225.1",
                "taxid": 2814589,
                "species_taxid": 2814589,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6021,
                "matched_fragments": 1993,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces panaciradicis",
                "strain": "strain=NBRC 109811",
                "accession": "GCA_023516615.1",
                "taxid": 1470261,
                "species_taxid": 1470261,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5669,
                "matched_fragments": 1980,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces hyaluromycini",
                "strain": "strain=NBRC 110483",
                "accession": "GCA_002217755.1",
                "taxid": 1377993,
                "species_taxid": 1377993,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6555,
                "matched_fragments": 2090,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fodineus",
                "strain": "strain=TW1S1",
                "accession": "GCA_001735805.1",
                "taxid": 1904616,
                "species_taxid": 1904616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3463,
                "matched_fragments": 1934,
                "total_fragments": 3304,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 3.12,
            "strain_heterogeneity": 66.67
        },
        "gtdb_result": [
            {
                "accession": "GCF_008704715.1",
                "gtdb_species": "s__Streptomyces chartreusis",
                "ani": 100.0,
                "matched_fragments": 3304,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.83",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008042075.1",
                "gtdb_species": "s__Streptomyces sp008042075",
                "ani": 91.8446,
                "matched_fragments": 2655,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014655715.1",
                "gtdb_species": "s__Streptomyces lanatus",
                "ani": 90.4063,
                "matched_fragments": 2514,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015160855.1",
                "gtdb_species": "s__Streptomyces ferrugineus",
                "ani": 90.0297,
                "matched_fragments": 2375,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004028635.1",
                "gtdb_species": "s__Streptomyces cyaneus",
                "ani": 89.3587,
                "matched_fragments": 2384,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003963535.1",
                "gtdb_species": "s__Streptomyces cyaneochromogenes",
                "ani": 89.3525,
                "matched_fragments": 2458,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900103585.1",
                "gtdb_species": "s__Streptomyces sp900103585",
                "ani": 89.2229,
                "matched_fragments": 2482,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001514235.1",
                "gtdb_species": "s__Streptomyces caeruleatus",
                "ani": 89.1768,
                "matched_fragments": 2337,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001513975.1",
                "gtdb_species": "s__Streptomyces curacoi",
                "ani": 89.1426,
                "matched_fragments": 2173,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.22",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_013362785.1",
                "gtdb_species": "s__Streptomyces sp013362785",
                "ani": 89.1301,
                "matched_fragments": 1780,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_019049285.1",
                "gtdb_species": "s__Streptomyces sp019049285",
                "ani": 88.9044,
                "matched_fragments": 2272,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000225525.1",
                "gtdb_species": "s__Streptomyces zinciresistens",
                "ani": 87.31,
                "matched_fragments": 1776,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000349325.1",
                "gtdb_species": "s__Streptomyces davaonensis",
                "ani": 86.1548,
                "matched_fragments": 2100,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000411315.1",
                "gtdb_species": "s__Streptomyces sp000411315",
                "ani": 85.7994,
                "matched_fragments": 2108,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001735805.1",
                "gtdb_species": "s__Streptomyces fodineus",
                "ani": 84.3487,
                "matched_fragments": 1935,
                "total_fragments": 3304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 28.0,
        "optimum_tmp": 26.0,
        "optimum_ph": 7.341,
        "genome_size": 9233023.2,
        "gc_content": 71.013,
        "coding_genes": 7761.667,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 69.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "chartreusis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}