{
    "type": "genome",
    "identifier": "GCF_008704995.1",
    "organism": "Streptomyces nodosus",
    "title": "Streptomyces nodosus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "KAIST",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008704995.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07709101",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "40318",
        "species_taxid": "40318",
        "organism_name": "Streptomyces nodosus",
        "infraspecific_name": "strain=ATCC 14899",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/26",
        "asm_name": "ASM870499v1",
        "asm_submitter": "KAIST",
        "gbrs_paired_asm": "GCA_008704995.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/704/995/GCF_008704995.1_ASM870499v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7772587",
        "genome_size_ungapped": "7772587",
        "gc_percent": "71.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008704995.1-RS_2024_05_17",
        "annotation_date": "2024-05-17",
        "total_gene_count": "6894",
        "protein_coding_gene_count": "6616",
        "non_coding_gene_count": "90",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-26",
    "dateModified": "2019-09-26",
    "datePublished": "2019-09-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces nodosus"
        ],
        "sample_taxid": [
            "40318"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.093 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 3.12,
        "strain_heterogeneity": 66.67,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7772587",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "7772587",
        "N50 (bp)": "7772587",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.9",
        "Number of CDSs": "6959",
        "Average Protein Length": "323.2",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "18",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces nodosus",
                "strain": "strain=ATCC 14899",
                "accession": "GCA_008704995.1",
                "taxid": 40318,
                "species_taxid": 40318,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2588,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces nodosus",
                "strain": "strain=DSM 40109",
                "accession": "GCA_014205035.1",
                "taxid": 40318,
                "species_taxid": 40318,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9985,
                "matched_fragments": 2589,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces nodosus",
                "strain": "strain=ATCC 14899",
                "accession": "GCA_000819545.1",
                "taxid": 40318,
                "species_taxid": 40318,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9716,
                "matched_fragments": 2560,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces colonosanans",
                "strain": "strain=MUSC 93",
                "accession": "GCA_001866645.1",
                "taxid": 1428652,
                "species_taxid": 1428652,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.086,
                "matched_fragments": 1396,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces glomeratus",
                "strain": "strain=DSM 41457",
                "accession": "GCA_021462825.1",
                "taxid": 284452,
                "species_taxid": 284452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9853,
                "matched_fragments": 1533,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces kebangsaanensis",
                "strain": "strain=SUK12",
                "accession": "GCA_001906585.1",
                "taxid": 864058,
                "species_taxid": 864058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.202,
                "matched_fragments": 1522,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sennicomposti",
                "strain": "strain=RCPT1-4",
                "accession": "GCA_019890635.1",
                "taxid": 2873384,
                "species_taxid": 2873384,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8773,
                "matched_fragments": 1437,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces anandii",
                "strain": "strain=JCM 4720",
                "accession": "GCA_014650655.1",
                "taxid": 285454,
                "species_taxid": 285454,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8356,
                "matched_fragments": 1489,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces naganishii",
                "strain": "strain=JCM 4654",
                "accession": "GCA_014650575.1",
                "taxid": 285447,
                "species_taxid": 285447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8327,
                "matched_fragments": 1496,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spiralis",
                "strain": "strain=JCM 3302",
                "accession": "GCA_014654675.1",
                "taxid": 66376,
                "species_taxid": 66376,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6478,
                "matched_fragments": 1626,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces brasiliensis",
                "strain": "strain=JCM 3086",
                "accession": "GCA_014647875.1",
                "taxid": 1954,
                "species_taxid": 1954,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4827,
                "matched_fragments": 1570,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces panaciradicis",
                "strain": "strain=NBRC 109811",
                "accession": "GCA_023516615.1",
                "taxid": 1470261,
                "species_taxid": 1470261,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3225,
                "matched_fragments": 1492,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces blattellae",
                "strain": "strain=TRM63209",
                "accession": "GCA_009709555.1",
                "taxid": 2569855,
                "species_taxid": 2569855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2997,
                "matched_fragments": 1399,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces achromogenes subsp. achromogenes",
                "strain": "strain=NRRL B-2120",
                "accession": "GCA_000720835.1",
                "taxid": 67256,
                "species_taxid": 67255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2916,
                "matched_fragments": 1462,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces justiciae",
                "strain": "strain=3R004",
                "accession": "GCA_015163075.1",
                "taxid": 2780140,
                "species_taxid": 2780140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1067,
                "matched_fragments": 1561,
                "total_fragments": 2590,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 3.12,
            "strain_heterogeneity": 66.67
        },
        "gtdb_result": [
            {
                "accession": "GCF_008704995.1",
                "gtdb_species": "s__Streptomyces nodosus",
                "ani": 100.0,
                "matched_fragments": 2588,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "97.72",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001417775.1",
                "gtdb_species": "s__Streptomyces sp001417775",
                "ani": 86.647,
                "matched_fragments": 1618,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001866645.1",
                "gtdb_species": "s__Streptomyces colonosanans",
                "ani": 86.0374,
                "matched_fragments": 1403,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014905555.1",
                "gtdb_species": "s__Streptomyces sp014905555",
                "ani": 86.0182,
                "matched_fragments": 1588,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002920635.1",
                "gtdb_species": "s__Streptomyces sp002920635",
                "ani": 85.9529,
                "matched_fragments": 1536,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001507435.1",
                "gtdb_species": "s__Streptomyces sp001507435",
                "ani": 85.675,
                "matched_fragments": 1711,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "96.23",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_006540305.1",
                "gtdb_species": "s__Streptomyces sp006540305",
                "ani": 84.8436,
                "matched_fragments": 1740,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002803075.1",
                "gtdb_species": "s__Streptomyces sp002803075",
                "ani": 84.8053,
                "matched_fragments": 1696,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001906585.1",
                "gtdb_species": "s__Streptomyces kebangsaanensis",
                "ani": 84.2215,
                "matched_fragments": 1517,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014650655.1",
                "gtdb_species": "s__Streptomyces anandii",
                "ani": 83.8671,
                "matched_fragments": 1486,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014650575.1",
                "gtdb_species": "s__Streptomyces naganishii",
                "ani": 83.806,
                "matched_fragments": 1501,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014654675.1",
                "gtdb_species": "s__Streptomyces spiralis",
                "ani": 83.6475,
                "matched_fragments": 1626,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014647875.1",
                "gtdb_species": "s__Streptomyces brasiliensis",
                "ani": 83.5101,
                "matched_fragments": 1565,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014650035.1",
                "gtdb_species": "s__Streptomyces lucensis",
                "ani": 83.3539,
                "matched_fragments": 1415,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008905045.1",
                "gtdb_species": "s__Streptomyces albicerus",
                "ani": 83.0357,
                "matched_fragments": 1501,
                "total_fragments": 2590,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.0,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 7714110.0,
        "gc_content": 70.8,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 67.804,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Streptomyces",
        "nodosus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}