{ "type": "genome", "identifier": "GCF_008711145.1", "organism": "Arenibacter lacus", "title": "Arenibacter lacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JNTUH", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008711145.1", "bioproject": "PRJNA224116", "biosample": "SAMN12710722", "wgs_master": "VVIN00000000.1", "refseq_category": "reference genome", "taxid": "2608629", "species_taxid": "2608629", "organism_name": "Arenibacter lacus", "infraspecific_name": "strain=JC631", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/27", "asm_name": "ASM871114v1", "asm_submitter": "JNTUH", "gbrs_paired_asm": "GCA_008711145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/711/145/GCF_008711145.1_ASM871114v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4194287", "genome_size_ungapped": "4194287", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "292", "contig_count": "292", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008711145.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3559", "protein_coding_gene_count": "3445", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-27", "dateModified": "2019-09-27", "datePublished": "2019-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Arenibacter lacus" ], "sample_taxid": [ "2608629" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Chilika lagoon" ], "sample_host_location_id": [], "data_size": "1.197 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4194287", "Number of Sequences": "292", "Longest Sequences (bp)": "230215", "N50 (bp)": "53245", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.8", "Number of CDSs": "3240", "Average Protein Length": "348.3", "Coding Ratio (%)": "80.7", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenibacter latericius", "strain": "strain=DSM 15913", "accession": "GCA_000424985.1", "taxid": 86104, "species_taxid": 86104, "relation_to_type": "type", "validated": true, "ani": 79.9722, "matched_fragments": 655, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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77.4535, "matched_fragments": 262, "total_fragments": 1288, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900177645.1", "gtdb_species": "s__Arenibacter troitsensis", "ani": 77.2198, "matched_fragments": 259, "total_fragments": 1288, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001020565.1", "gtdb_species": "s__Maribacter thermophilus", "ani": 76.6574, "matched_fragments": 104, 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