{ "type": "genome", "identifier": "GCF_008711175.1", "organism": "Nesterenkonia ebinurensis", "title": "Nesterenkonia ebinurensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008711175.1", "bioproject": "PRJNA224116", "biosample": "SAMN12690808", "wgs_master": "VWNF00000000.1", "refseq_category": "reference genome", "taxid": "2608252", "species_taxid": "2608252", "organism_name": "Nesterenkonia ebinurensis", "infraspecific_name": "strain=MD2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/27", "asm_name": "ASM871117v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_008711175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/711/175/GCF_008711175.1_ASM871117v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3739891", "genome_size_ungapped": "3739891", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008711175.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "3614", "protein_coding_gene_count": "3471", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-27", "dateModified": "2019-09-27", "datePublished": "2019-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Nesterenkonia ebinurensis" ], "sample_taxid": [ "2608252" ], "sample_host_organism": [ "Populus euphratica" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Ebinur Lake, Xinjiang province" ], "sample_host_location_id": [], "data_size": "1.048 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3739891", "Number of Sequences": "50", "Longest Sequences (bp)": "652652", "N50 (bp)": "339101", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "3542", "Average Protein Length": "311.5", "Coding Ratio (%)": "88.5", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nesterenkonia ebinurensis", "strain": "strain=MD2", "accession": "GCA_008711175.1", "taxid": 2608252, "species_taxid": 2608252, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1226, "total_fragments": 1226, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=F10", "accession": "GCA_009758175.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 84.0193, "matched_fragments": 662, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=CGMCC 1.12781", "accession": "GCA_014639295.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 83.9865, "matched_fragments": 670, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia muleiensis", "strain": "strain=RB2", "accession": "GCA_003600155.1", "taxid": 2282648, "species_taxid": 2282648, "relation_to_type": "type", "validated": true, "ani": 81.7923, "matched_fragments": 551, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sedimenti", "strain": "strain=MY13", "accession": "GCA_012641515.1", "taxid": 1463632, "species_taxid": 1463632, "relation_to_type": "type", "validated": true, "ani": 80.1672, "matched_fragments": 460, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia cremea", "strain": "strain=CGMCC 1.15388", "accession": "GCA_014642675.1", "taxid": 1882340, "species_taxid": 1882340, "relation_to_type": "type", "validated": true, "ani": 79.5788, "matched_fragments": 386, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sphaerica", "strain": "strain=GY239", "accession": "GCA_005771565.1", "taxid": 1804988, "species_taxid": 1804988, "relation_to_type": "type", "validated": true, "ani": 79.4137, "matched_fragments": 379, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Garicola koreensis", "strain": "strain=DSM 28238", "accession": "GCA_014195445.1", "taxid": 1262554, "species_taxid": 1262554, "relation_to_type": "type", "validated": true, "ani": 79.1807, "matched_fragments": 330, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia jeotgali", "strain": "strain=DSM 19081", "accession": "GCA_014138825.1", "taxid": 317018, "species_taxid": 317018, "relation_to_type": "type", "validated": true, "ani": 79.0674, "matched_fragments": 357, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia massiliensis", "strain": "strain=NP1", "accession": "GCA_000455245.1", "taxid": 1232429, "species_taxid": 1232429, "relation_to_type": "type", "validated": true, "ani": 79.063, "matched_fragments": 331, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alba", "strain": "strain=DSM 19423", "accession": "GCA_000421745.1", "taxid": 515814, "species_taxid": 515814, "relation_to_type": "type", "validated": true, "ani": 78.6558, "matched_fragments": 310, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia halotolerans", "strain": "strain=DSM 15474", "accession": "GCA_014874065.1", "taxid": 225325, "species_taxid": 225325, "relation_to_type": "type", "validated": true, "ani": 78.6411, "matched_fragments": 313, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium murale", "strain": "strain=DSM 22056", "accession": "GCA_003352835.1", "taxid": 1050153, "species_taxid": 1050153, "relation_to_type": "type", "validated": true, "ani": 77.3544, "matched_fragments": 88, "total_fragments": 1226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter terrae", "strain": "strain=Z1-20", "accession": "GCA_015708085.1", "taxid": 2935737, 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009758175.1", "gtdb_species": "s__Nesterenkonia alkaliphila", "ani": 84.0231, "matched_fragments": 662, "total_fragments": 1226, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003600155.1", "gtdb_species": "s__Nesterenkonia muleiensis", "ani": 81.7788, "matched_fragments": 552, "total_fragments": 1226, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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