{ "type": "genome", "identifier": "GCF_008711325.1", "organism": "Roseibium sediminis", "title": "Roseibium sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008711325.1", "bioproject": "PRJNA224116", "biosample": "SAMN12687845", "wgs_master": "VXDB00000000.1", "refseq_category": "reference genome", "taxid": "1775174", "species_taxid": "1775174", "organism_name": "Roseibium sediminis", "infraspecific_name": "strain=KCTC 52373", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/27", "asm_name": "ASM871132v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_008711325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/711/325/GCF_008711325.1_ASM871132v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4993424", "genome_size_ungapped": "4993424", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "117", "contig_count": "117", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008711325.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "4724", "protein_coding_gene_count": "4630", "non_coding_gene_count": "53", "pubmed_id": "28857737" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-27", "dateModified": "2019-09-27", "datePublished": "2019-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseibium sediminis" ], "sample_taxid": [ "1775174" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Bohai Sea" ], "sample_host_location_id": [], "data_size": "1.420 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4993424", "Number of Sequences": "117", "Longest Sequences (bp)": "404286", "N50 (bp)": "196504", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.0", "Number of CDSs": "4639", "Average Protein Length": "313.5", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseibium sediminis", "strain": "strain=KCTC 52373", "accession": "GCA_008711325.1", "taxid": 1775174, "species_taxid": 1775174, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1613, "total_fragments": 1615, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseibium aestuarii", "strain": "strain=SYSU M00256-3", "accession": "GCA_008477545.1", "taxid": 2600299, "species_taxid": 2600299, "relation_to_type": "type", "validated": true, "ani": 78.7094, "matched_fragments": 390, "total_fragments": 1615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium suaedae", "strain": "strain=DSM 22153", "accession": "GCA_900142725.1", "taxid": 735517, "species_taxid": 735517, "relation_to_type": "type", "validated": true, "ani": 78.6695, "matched_fragments": 427, "total_fragments": 1615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium litorale", "strain": "strain=4C16A", "accession": "GCA_014842915.1", "taxid": 2803841, "species_taxid": 2803841, "relation_to_type": "type", "validated": true, "ani": 78.4766, "matched_fragments": 406, "total_fragments": 1615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium aggregatum", "strain": "strain=IAM 12614", "accession": "GCA_000168975.1", "taxid": 187304, "species_taxid": 187304, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4124, "matched_fragments": 474, "total_fragments": 1615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium polysiphoniae", "strain": "strain=KACC 19711", "accession": "GCA_014842925.1", "taxid": 2571221, "species_taxid": 2571221, "relation_to_type": "type", "validated": true, "ani": 78.0682, "matched_fragments": 368, "total_fragments": 1615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter carbonis", "strain": "strain=Q4.6", "accession": "GCA_003012935.1", "taxid": 2067569, "species_taxid": 2067569, "relation_to_type": "type", "validated": true, "ani": 78.0228, "matched_fragments": 327, "total_fragments": 1615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter indicus", "strain": "strain=DSM 23407", "accession": "GCA_001517385.1", "taxid": 466044, "species_taxid": 466044, "relation_to_type": "type", "validated": true, "ani": 77.9361, "matched_fragments": 348, "total_fragments": 1615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter indicus", "strain": "strain=DSM 23407", "accession": "GCA_001418225.1", "taxid": 466044, "species_taxid": 466044, "relation_to_type": "type", "validated": true, "ani": 77.9271, "matched_fragments": 349, "total_fragments": 1615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium aquae", "strain": "strain=CGMCC 1.12426", "accession": "GCA_014637575.1", "taxid": 1323746, "species_taxid": 1323746, "relation_to_type": "type", "validated": true, "ani": 77.8573, "matched_fragments": 349, "total_fragments": 1615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=NCTC13350", "accession": "GCA_900454465.1", "taxid": 121719, 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