{ "type": "genome", "identifier": "GCF_008727925.1", "organism": "Adhaeribacter soli", "title": "Adhaeribacter soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008727925.1", "bioproject": "PRJNA224116", "biosample": "SAMN12671291", "wgs_master": "VTWT00000000.1", "refseq_category": "reference genome", "taxid": "2607655", "species_taxid": "2607655", "organism_name": "Adhaeribacter soli", "infraspecific_name": "strain=MA2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/29", "asm_name": "ASM872792v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_008727925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/727/925/GCF_008727925.1_ASM872792v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4974022", "genome_size_ungapped": "4974022", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008727925.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3963", "protein_coding_gene_count": "3900", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-29", "dateModified": "2019-09-29", "datePublished": "2019-09-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Adhaeribacter soli" ], "sample_taxid": [ "2607655" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Busan" ], "sample_host_location_id": [], "data_size": "1.403 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4974022", "Number of Sequences": "16", "Longest Sequences (bp)": "897986", "N50 (bp)": "404234", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.9", "Number of CDSs": "3890", "Average Protein Length": "350.9", "Coding Ratio (%)": "82.3", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Adhaeribacter soli", "strain": "strain=MA2", "accession": "GCA_008727925.1", "taxid": 2607655, "species_taxid": 2607655, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1650, "total_fragments": 1651, "ani_threshold": 95, "status": 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"GCA_003347595.2", "taxid": 2171629, "species_taxid": 2171629, "relation_to_type": "type", "validated": true, "ani": 76.4972, "matched_fragments": 214, "total_fragments": 1651, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter deserti", "strain": "strain=JC215", "accession": "GCA_023630255.1", "taxid": 1343896, "species_taxid": 1343896, "relation_to_type": "type", "validated": true, "ani": 76.4789, "matched_fragments": 128, "total_fragments": 1651, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rufibacter sediminis", "strain": "strain=H-1", "accession": "GCA_014269285.1", "taxid": 2762756, "species_taxid": 2762756, "relation_to_type": "type", "validated": true, "ani": 76.4644, "matched_fragments": 155, "total_fragments": 1651, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rufibacter immobilis", "strain": "strain=MCC P1", "accession": "GCA_003721565.1", "taxid": 1348778, "species_taxid": 1348778, 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008727925.1", "gtdb_species": "s__Adhaeribacter_A soli", "ani": 100.0, "matched_fragments": 1650, "total_fragments": 1651, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Adhaeribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016623615.1", "gtdb_species": "s__Adhaeribacter_A sp016623615", "ani": 81.1045, "matched_fragments": 813, "total_fragments": 1651, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Adhaeribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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